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1700066M21Rik RIKEN cDNA 1700066M21 gene [ Mus musculus (house mouse) ]

Gene ID: 73467, updated on 2-Nov-2024

Summary

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Official Symbol
1700066M21Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700066M21 geneprovided by MGI
Primary source
MGI:MGI:1920717
See related
Ensembl:ENSMUSG00000038323 AllianceGenome:MGI:1920717
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Predicted to be involved in oxidative phosphorylation. Predicted to be located in mitochondrial matrix. Predicted to be active in mitochondrion. Is expressed in mandible; maxilla; and orbito-sphenoid. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 53. Orthologous to human C2orf69 (chromosome 2 open reading frame 69). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in cortex adult (RPKM 4.1), CNS E18 (RPKM 3.9) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See 1700066M21Rik in Genome Data Viewer
Location:
1 C1.3; 1 28.78 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (57416755..57424587)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (57377596..57385428)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_00978 Neighboring gene lactate dehydrogenase A pseudogene Neighboring gene AmnSINE1 enhancer AS021 Neighboring gene STARR-seq mESC enhancer starr_00980 Neighboring gene RIKEN cDNA 4930558J18 gene Neighboring gene STARR-seq mESC enhancer starr_00984 Neighboring gene tRNA-yW synthesizing protein 5 Neighboring gene CapStarr-seq enhancer MGSCv37_chr1:57463249-57463358 Neighboring gene matrix AAA peptidase interacting protein 1 Neighboring gene predicted gene, 22371

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in oxidative phosphorylation IEA
Inferred from Electronic Annotation
more info
  
involved_in oxidative phosphorylation ISO
Inferred from Sequence Orthology
more info
  
Component Evidence Code Pubs
located_in mitochondrial matrix IEA
Inferred from Electronic Annotation
more info
  
is_active_in mitochondrion IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in mitochondrion ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
mitochondrial protein C2orf69 homolog
Names
UPF0565 protein C2orf69 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028546.1 → NP_082822.1  mitochondrial protein C2orf69 homolog precursor

    See identical proteins and their annotated locations for NP_082822.1

    Status: VALIDATED

    Source sequence(s)
    AC161493, CJ047538
    Consensus CDS
    CCDS48264.1
    UniProtKB/Swiss-Prot
    E9QNR4, Q9D9H8
    Related
    ENSMUSP00000040240.3, ENSMUST00000042734.3
    Conserved Domains (1) summary
    pfam10561
    Location:55 → 341
    UPF0565; uncharacterized protein family UPF0565

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    57416755..57424587
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_030243183.1 → XP_030099043.1  mitochondrial protein C2orf69 homolog isoform X1

    Conserved Domains (1) summary
    pfam10561
    Location:56 → 95
    UPF0565; Uncharacterized protein family UPF0565

RNA

  1. XR_004934779.1 RNA Sequence

  2. XR_373264.4 RNA Sequence

Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D9H8.3 GenPept UniProtKB/Swiss-Prot:Q9D9H8

Gene LinkOut

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