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ncaph2 non-SMC condensin II complex subunit H2 [ Xenopus tropicalis (tropical clawed frog) ]

Gene ID: 733729, updated on 17-Aug-2024

Summary

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Official Symbol
ncaph2provided by Xenbase
Official Full Name
non-SMC condensin II complex subunit H2provided by Xenbase
Primary source
Xenbase:XB-GENE-993063
See related
Ensembl:ENSXETG00000023090
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Xenopus tropicalis
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Silurana
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
22
Annotation release Status Assembly Chr Location
104 current UCB_Xtro_10.0 (GCF_000004195.4) 3 NC_030679.2 (89408138..89431893)
103 previous assembly Xenopus_tropicalis_v9.1 (GCF_000004195.3) 3 NC_030679.1 (79773582..79800798)

Chromosome 3 - NC_030679.2Genomic Context describing neighboring genes Neighboring gene myo-inositol oxygenase Neighboring gene lipase maturation factor 2 Neighboring gene protein tyrosine phosphatase domain-containing protein 1-like Neighboring gene thymidine phosphorylase

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. Rana AA, et al. PLoS Genet, 2006 Nov 17. PMID 17112317, Free PMC Article
  2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article
  4. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, et al. Brief Bioinform, 2011 Sep. PMID 21873635, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by Xenbase

Function Evidence Code Pubs
enables chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
  
Process Evidence Code Pubs
acts_upstream_of_or_within chromosome condensation IEA
Inferred from Electronic Annotation
more info
  
acts_upstream_of_or_within embryonic body morphogenesis IMP
Inferred from Mutant Phenotype
more info
 PubMed 
involved_in meiotic chromosome condensation IBA
Inferred from Biological aspect of Ancestor
more info
  
involved_in mitotic sister chromatid separation IBA
Inferred from Biological aspect of Ancestor
more info
  
Component Evidence Code Pubs
part_of condensin complex IBA
Inferred from Biological aspect of Ancestor
more info
  
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
  
located_in nucleus IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
condensin-2 complex subunit H2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001044499.1 → NP_001037964.1  condensin-2 complex subunit H2

    See identical proteins and their annotated locations for NP_001037964.1

    Status: PROVISIONAL

    Source sequence(s)
    CR761216
    UniProtKB/Swiss-Prot
    Q28GV1
    UniProtKB/TrEMBL
    A0A6I8RQD4
    Related
    ENSXETP00000049937.5, ENSXETT00000049937.5
    Conserved Domains (3) summary
    pfam06278
    Location:11 → 122
    CNDH2_N; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
    pfam16858
    Location:317 → 606
    CNDH2_C; Condensin II complex subunit CAP-H2 or CNDH2, C-term
    pfam16869
    Location:147 → 260
    CNDH2_M; PF16858

RefSeqs of Annotated Genomes: Xenopus tropicalis Annotation Release 104 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference UCB_Xtro_10.0 Primary Assembly

Genomic

  1. NC_030679.2 Reference UCB_Xtro_10.0 Primary Assembly

    Range
    89408138..89431893
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_012959163.3 → XP_012814617.2  condensin-2 complex subunit H2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RQD4, A0A8J1J7L5
    Conserved Domains (3) summary
    pfam06278
    Location:12 → 122
    CNDH2_N; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
    pfam16858
    Location:317 → 606
    CNDH2_C; Condensin II complex subunit CAP-H2 or CNDH2, C-term
    pfam16869
    Location:147 → 272
    CNDH2_M; PF16858

  2. XM_031897997.1 → XP_031753857.1  condensin-2 complex subunit H2 isoform X1

    UniProtKB/TrEMBL
    A0A6I8RQD4, A0A8J1J7L5
    Conserved Domains (3) summary
    pfam06278
    Location:12 → 122
    CNDH2_N; Condensin II complex subunit CAP-H2 or CNDH2, N-terminal
    pfam16858
    Location:317 → 606
    CNDH2_C; Condensin II complex subunit CAP-H2 or CNDH2, C-term
    pfam16869
    Location:147 → 272
    CNDH2_M; PF16858
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q28GV1.1 GenPept UniProtKB/Swiss-Prot:Q28GV1

Gene LinkOut

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