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1700037C18Rik RIKEN cDNA 1700037C18 gene [ Mus musculus (house mouse) ]

Gene ID: 73261, updated on 30-Apr-2024

Summary

Official Symbol
1700037C18Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700037C18 geneprovided by MGI
Primary source
MGI:MGI:1920511
See related
Ensembl:ENSMUSG00000005983 AllianceGenome:MGI:1920511
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810022L20Rik
Summary
Is expressed in ductus deferens; epididymis; ileum; and testis. Orthologous to human C16orf90 (chromosome 16 open reading frame 90). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 67.8) and kidney adult (RPKM 3.6) See more
Orthologs
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Genomic context

See 1700037C18Rik in Genome Data Viewer
Location:
16 A1; 16 2.29 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (3723662..3726553, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (3905798..3908689, complement)

Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E5522 Neighboring gene olfactory receptor family 2 subfamily C member 1 Neighboring gene zinc finger protein 174 Neighboring gene zinc finger protein 597 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3872304-3872526 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3872697-3872880 Neighboring gene N(alpha)-acetyltransferase 60, NatF catalytic subunit Neighboring gene STARR-positive B cell enhancer mm9_chr16:3884448-3884748 Neighboring gene predicted gene, 41410 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3908535-3908837 Neighboring gene CapStarr-seq enhancer MGSCv37_chr16:3909019-3909128 Neighboring gene clusterin associated protein 1 Neighboring gene prothymosin alpha-like Neighboring gene predicted gene 15539

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C16orf90 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028484.2NP_082760.2  uncharacterized protein C16orf90 homolog

    See identical proteins and their annotated locations for NP_082760.2

    Status: VALIDATED

    Source sequence(s)
    AK012792, AK161085, CR517846
    Consensus CDS
    CCDS49746.1
    UniProtKB/Swiss-Prot
    B9EJK2, Q8BT88, Q9D9P5
    UniProtKB/TrEMBL
    H3BLF4
    Related
    ENSMUSP00000111525.2, ENSMUST00000115859.8
    Conserved Domains (1) summary
    pfam15486
    Location:2162
    DUF4644; Domain of unknown function (DUF4644)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000082.7 Reference GRCm39 C57BL/6J

    Range
    3723662..3726553 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)