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1700037C18Rik RIKEN cDNA 1700037C18 gene [ Mus musculus (house mouse) ]

Gene ID: 73261, updated on 31-Jan-2019

Summary

Official Symbol
1700037C18Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700037C18 geneprovided by MGI
Primary source
MGI:MGI:1920511
See related
Ensembl:ENSMUSG00000005983
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810022L20Rik
Expression
Biased expression in testis adult (RPKM 67.8) and kidney adult (RPKM 3.6) See more
Orthologs

Genomic context

See 1700037C18Rik in Genome Data Viewer
Location:
16; 16 A1
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (3905798..3908689, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (3905798..3908689, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene zinc finger protein 174 Neighboring gene zinc finger protein 597 Neighboring gene N(alpha)-acetyltransferase 60, NatF catalytic subunit Neighboring gene predicted gene, 41410 Neighboring gene clusterin associated protein 1 Neighboring gene uncharacterized LOC108168281 Neighboring gene predicted gene 15539 Neighboring gene NLR family, CARD domain containing 3

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C16orf90 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028484.2NP_082760.2  uncharacterized protein C16orf90 homolog

    See identical proteins and their annotated locations for NP_082760.2

    Status: VALIDATED

    Source sequence(s)
    AK012792, AK161085, CR517846
    Consensus CDS
    CCDS49746.1
    UniProtKB/Swiss-Prot
    Q8BT88
    Related
    ENSMUSP00000111525.1, ENSMUST00000115859.7
    Conserved Domains (1) summary
    pfam15486
    Location:2162
    DUF4644; Domain of unknown function (DUF4644)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    3905798..3908689 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006522619.3XP_006522682.1  uncharacterized protein C16orf90 homolog isoform X2

    See identical proteins and their annotated locations for XP_006522682.1

    Conserved Domains (1) summary
    pfam15486
    Location:7167
    DUF4644; Domain of unknown function (DUF4644)
  2. XM_006522618.3XP_006522681.1  uncharacterized protein C16orf90 homolog isoform X2

    See identical proteins and their annotated locations for XP_006522681.1

    Conserved Domains (1) summary
    pfam15486
    Location:7167
    DUF4644; Domain of unknown function (DUF4644)
  3. XM_006522620.3XP_006522683.1  uncharacterized protein C16orf90 homolog isoform X2

    See identical proteins and their annotated locations for XP_006522683.1

    Conserved Domains (1) summary
    pfam15486
    Location:7167
    DUF4644; Domain of unknown function (DUF4644)
  4. XM_006522621.2XP_006522684.1  uncharacterized protein C16orf90 homolog isoform X2

    See identical proteins and their annotated locations for XP_006522684.1

    Conserved Domains (1) summary
    pfam15486
    Location:7167
    DUF4644; Domain of unknown function (DUF4644)
  5. XM_006522617.1XP_006522680.1  uncharacterized protein C16orf90 homolog isoform X1

    Related
    ENSMUSP00000135766.1, ENSMUST00000177323.7
    Conserved Domains (1) summary
    pfam15486
    Location:16176
    DUF4644; Domain of unknown function (DUF4644)
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