U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

C16orf90 chromosome 16 open reading frame 90 [ Homo sapiens (human) ]

Gene ID: 646174, updated on 28-Sep-2022

Summary

Official Symbol
C16orf90provided by HGNC
Official Full Name
chromosome 16 open reading frame 90provided by HGNC
Primary source
HGNC:HGNC:34455
See related
Ensembl:ENSG00000215131 AllianceGenome:HGNC:34455
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 8.1) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See C16orf90 in Genome Data Viewer
Location:
16p13.3
Exon count:
4
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 16 NC_000016.10 (3493484..3496652, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 16 NC_060940.1 (3520742..3523910, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (3543484..3546652, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene N-alpha-acetyltransferase 60, NatF catalytic subunit Neighboring gene Sharpr-MPRA regulatory region 11363 Neighboring gene microRNA 6126 Neighboring gene ribosomal protein L18 pseudogene 12 Neighboring gene clusterin associated protein 1 Neighboring gene uncharacterized LOC101929732 Neighboring gene NLR family CARD domain containing 3 Neighboring gene uncharacterized LOC124903632

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

General protein information

Preferred Names
uncharacterized protein C16orf90

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001080524.2NP_001073993.1  uncharacterized protein C16orf90 isoform a

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (a).
    Source sequence(s)
    AC004224
    Consensus CDS
    CCDS45397.1
    UniProtKB/Swiss-Prot
    A8MZG2
    Related
    ENSP00000401335.3, ENST00000437192.8
    Conserved Domains (1) summary
    pfam15486
    Location:16173
    DUF4644; Domain of unknown function (DUF4644)
  2. NM_001353382.1NP_001340311.1  uncharacterized protein C16orf90 isoform b

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (b) has a shorter and distinct N-terminus compared to isoform a.
    Source sequence(s)
    AC004224
    Conserved Domains (1) summary
    pfam15486
    Location:9166
    DUF4644; Domain of unknown function (DUF4644)
  3. NM_001353383.1NP_001340312.1  uncharacterized protein C16orf90 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3, 4, and 5 all encode the same isoform (c).
    Source sequence(s)
    AC004224, HY025685
    Conserved Domains (1) summary
    pfam15486
    Location:186
    DUF4644; Domain of unknown function (DUF4644)
  4. NM_001353384.1NP_001340313.1  uncharacterized protein C16orf90 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3, 4, and 5 all encode the same isoform (c).
    Source sequence(s)
    AC004224
    Conserved Domains (1) summary
    pfam15486
    Location:186
    DUF4644; Domain of unknown function (DUF4644)
  5. NM_001353385.2NP_001340314.1  uncharacterized protein C16orf90 isoform c

    Status: VALIDATED

    Description
    Transcript Variant: This variant (5) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (c) is shorter at the N-terminus compared to isoform a. Variants 3, 4, and 5 all encode the same isoform (c).
    Source sequence(s)
    AC004224
    Conserved Domains (1) summary
    pfam15486
    Location:186
    DUF4644; Domain of unknown function (DUF4644)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p14 Primary Assembly

    Range
    3493484..3496652 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024450393.1XP_024306161.1  uncharacterized protein C16orf90 isoform X1

    Conserved Domains (1) summary
    pfam15486
    Location:186
    DUF4644; Domain of unknown function (DUF4644)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060940.1 Alternate T2T-CHM13v2.0

    Range
    3520742..3523910 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)