Format

Send to:

Choose Destination

Cda cytidine deaminase [ Mus musculus (house mouse) ]

Gene ID: 72269, updated on 23-May-2018

Summary

Official Symbol
Cdaprovided by MGI
Official Full Name
cytidine deaminaseprovided by MGI
Primary source
MGI:MGI:1919519
See related
Ensembl:ENSMUSG00000028755 Vega:OTTMUSG00000009980
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2210401N16Rik
Expression
Biased expression in duodenum adult (RPKM 159.2), kidney adult (RPKM 84.5) and 3 other tissues See more
Orthologs

Genomic context

See Cda in Genome Data Viewer
Location:
4; 4 D3
Exon count:
5
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 4 NC_000070.6 (138338528..138368311, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (137894443..137923870, complement)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene dolichyl-di-phosphooligosaccharide-protein glycotransferase Neighboring gene microRNA 7019 Neighboring gene PTEN induced putative kinase 1 Neighboring gene family with sequence similarity 43, member B Neighboring gene ribosomal protein L38, pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Pathways from BioSystems

General gene information

Markers

Homology

Clone Names

  • MGC67370

Gene Ontology Provided by MGI

Function Evidence Code Pubs
catalytic activity IEA
Inferred from Electronic Annotation
more info
 
cytidine deaminase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytidine deaminase activity ISO
Inferred from Sequence Orthology
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
identical protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
nucleoside binding ISO
Inferred from Sequence Orthology
more info
 
protein homodimerization activity ISO
Inferred from Sequence Orthology
more info
 
zinc ion binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
zinc ion binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
cytidine deamination IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytidine deamination ISO
Inferred from Sequence Orthology
more info
 
negative regulation of cell growth ISO
Inferred from Sequence Orthology
more info
 
negative regulation of nucleotide metabolic process ISO
Inferred from Sequence Orthology
more info
 
protein homotetramerization ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
cytosol IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytosol ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
cytidine deaminase
Names
cytidine aminohydrolase
NP_082452.1
XP_006539259.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_028176.1NP_082452.1  cytidine deaminase

    See identical proteins and their annotated locations for NP_082452.1

    Status: PROVISIONAL

    Source sequence(s)
    BC050114
    Consensus CDS
    CCDS18826.1
    UniProtKB/Swiss-Prot
    P56389
    Related
    ENSMUSP00000030535.3, OTTMUSP00000010595, ENSMUST00000030535.3, OTTMUST00000023202
    Conserved Domains (1) summary
    TIGR01354
    Location:16142
    cyt_deam_tetra; cytidine deaminase, homotetrameric

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p4 C57BL/6J

    Range
    138338528..138368311 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006539196.3XP_006539259.1  cytidine deaminase isoform X1

    Conserved Domains (1) summary
    cl00269
    Location:2351
    cytidine_deaminase-like; Cytidine and deoxycytidylate deaminase zinc-binding region. The family contains cytidine deaminases, nucleoside deaminases, deoxycytidylate deaminases and riboflavin deaminases. Also included are the apoBec family of mRNA editing enzymes. All members ...
Support Center