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PHATRDRAFT_3676 hypothetical protein [ Phaeodactylum tricornutum CCAP 1055/1 ]

Gene ID: 7195356, updated on 21-Dec-2023

Summary

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Gene symbol
PHATRDRAFT_3676
Gene description
hypothetical protein
Locus tag
PHATRDRAFT_3676
Gene type
protein coding
RNA name
predicted protein
RefSeq status
PROVISIONAL
Organism
Phaeodactylum tricornutum CCAP 1055/1 (strain: CCAP 1055/1)
Lineage
Eukaryota; Stramenopiles; Bacillariophyta; Bacillariophyceae; Bacillariophycidae; Naviculales; Phaeodactylaceae; Phaeodactylum
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Genomic context

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Location:
chromosome: 20
Exon count:
2
Sequence:
Chromosome: 20; NC_011688.1 (78178..79119)

Chromosome 20 - NC_011688.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene aliphatic amidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_011688.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The Phaeodactylum genome reveals the evolutionary history of diatom genomes. Bowler C, et al. Nature, 2008 Nov 13. PMID 18923393

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables potassium ion leak channel activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in potassium ion transmembrane transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in stabilization of membrane potential IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_011688.1 Reference assembly

    Range
    78178..79119
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_002183507.1 → XP_002183543.1  predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]

    See identical proteins and their annotated locations for XP_002183543.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    B7G8X6
    Conserved Domains (3) summary
    cd00051
    Location:220 → 277
    EFh; EF-hand, calcium binding motif; A diverse superfamily of calcium sensors and calcium signal modulators; most examples in this alignment model have 2 active canonical EF hands. Ca2+ binding induces a conformational change in the EF-hand motif, leading to ...
    pfam07885
    Location:2 → 78
    Ion_trans_2; Ion channel
    pfam13499
    Location:220 → 277
    EF-hand_7; EF-hand domain pair
Nucleotide Protein
Heading Accession and Version

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