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Apmap adipocyte plasma membrane associated protein [ Mus musculus (house mouse) ]

Gene ID: 71881, updated on 7-Apr-2019

Summary

Official Symbol
Apmapprovided by MGI
Official Full Name
adipocyte plasma membrane associated proteinprovided by MGI
Primary source
MGI:MGI:1919131
See related
Ensembl:ENSMUSG00000033096
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI314817; 2310001A20Rik
Expression
Ubiquitous expression in kidney adult (RPKM 26.0), subcutaneous fat pad adult (RPKM 25.0) and 28 other tissues See more
Orthologs

Genomic context

See Apmap in Genome Data Viewer
Location:
2; 2 G3
Exon count:
11
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 2 NC_000068.7 (150583081..150608558, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 2 NC_000068.6 (150408817..150434259, complement)

Chromosome 2 - NC_000068.7Genomic Context describing neighboring genes Neighboring gene ankyrin and armadillo repeat containing pseudogene Neighboring gene cystatin F (leukocystatin) Neighboring gene acyl-CoA synthetase short-chain family member 1 Neighboring gene RIKEN cDNA E130215H24 gene Neighboring gene visual system homeobox 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
arylesterase activity ISO
Inferred from Sequence Orthology
more info
 
strictosidine synthase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell surface ISO
Inferred from Sequence Orthology
more info
 
endoplasmic reticulum IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
adipocyte plasma membrane-associated protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001356491.1NP_001343420.1  adipocyte plasma membrane-associated protein isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and coding sequence compared to variant 1. The resulting isoform (2) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL845174
    Conserved Domains (2) summary
    COG3386
    Location:1243
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    cl22863
    Location:124211
    Str_synth; Strictosidine synthase
  2. NM_001356492.1NP_001343421.1  adipocyte plasma membrane-associated protein isoform 3

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR and coding sequence and uses an alternate splice junction compared to variant 1. The resulting isoform (3) is shorter at the N-terminus compared to isoform 1.
    Source sequence(s)
    AL845174
    Conserved Domains (1) summary
    cl22863
    Location:592
    Str_synth; Strictosidine synthase
  3. NM_027977.3NP_082253.1  adipocyte plasma membrane-associated protein isoform 1

    See identical proteins and their annotated locations for NP_082253.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AK009057, BY230335
    Consensus CDS
    CCDS16858.1
    UniProtKB/Swiss-Prot
    Q9D7N9
    Related
    ENSMUSP00000040840.6, ENSMUST00000046399.6
    Conserved Domains (4) summary
    COG3386
    Location:72319
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    cd05819
    Location:101136
    NHL; NHL repeat [structural motif]
    cl18310
    Location:95283
    NHL; NHL repeat unit of beta-propeller proteins
    cl22863
    Location:200287
    Str_synth; Strictosidine synthase

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000068.7 Reference GRCm38.p4 C57BL/6J

    Range
    150583081..150608558 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006500199.3XP_006500262.1  adipocyte plasma membrane-associated protein isoform X2

    Conserved Domains (2) summary
    COG3386
    Location:1243
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    cl22863
    Location:124211
    Str_synth; Strictosidine synthase
  2. XM_017319266.1XP_017174755.1  adipocyte plasma membrane-associated protein isoform X3

    Conserved Domains (1) summary
    cl22863
    Location:592
    Str_synth; Strictosidine synthase
  3. XM_006500198.2XP_006500261.1  adipocyte plasma membrane-associated protein isoform X1

    Conserved Domains (4) summary
    COG3386
    Location:33280
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    cd05819
    Location:6297
    NHL; NHL repeat [structural motif]
    cl18310
    Location:56244
    NHL; NHL repeat unit of beta-propeller proteins
    cl22863
    Location:161248
    Str_synth; Strictosidine synthase
  4. XM_006500200.2XP_006500263.1  adipocyte plasma membrane-associated protein isoform X3

    Conserved Domains (1) summary
    cl22863
    Location:592
    Str_synth; Strictosidine synthase
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