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APMAP adipocyte plasma membrane associated protein [ Homo sapiens (human) ]

Gene ID: 57136, updated on 24-Nov-2020

Summary

Official Symbol
APMAPprovided by HGNC
Official Full Name
adipocyte plasma membrane associated proteinprovided by HGNC
Primary source
HGNC:HGNC:13238
See related
Ensembl:ENSG00000101474 MIM:615884
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
BSCv; C20orf3
Expression
Ubiquitous expression in thyroid (RPKM 46.5), fat (RPKM 34.1) and 24 other tissues See more
Orthologs

Genomic context

See APMAP in Genome Data Viewer
Location:
20p11.21
Exon count:
9
Annotation release Status Assembly Chr Location
109.20201120 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (24962925..24992930, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (24943566..24973610, complement)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105372578 Neighboring gene cystatin F Neighboring gene RNA, U6 small nuclear 1257, pseudogene Neighboring gene acyl-CoA synthetase short chain family member 1 Neighboring gene visual system homeobox 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
arylesterase activity IDA
Inferred from Direct Assay
more info
PubMed 
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
strictosidine synthase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
biosynthetic process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cell surface IDA
Inferred from Direct Assay
more info
PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
membrane HDA PubMed 
membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
adipocyte plasma membrane-associated protein
Names
protein BSCv

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_020531.3NP_065392.1  adipocyte plasma membrane-associated protein

    See identical proteins and their annotated locations for NP_065392.1

    Status: VALIDATED

    Source sequence(s)
    AK026866, AL035661, BG773501, CF131759
    Consensus CDS
    CCDS13166.1
    UniProtKB/Swiss-Prot
    Q9HDC9
    Related
    ENSP00000217456.2, ENST00000217456.3
    Conserved Domains (4) summary
    COG3386
    Location:73320
    YvrE; Sugar lactone lactonase YvrE [Carbohydrate transport and metabolism]
    cd05819
    Location:102137
    NHL; NHL repeat [structural motif]
    cl18310
    Location:96284
    NHL; NHL repeat unit of beta-propeller proteins
    cl22863
    Location:201288
    Str_synth; Strictosidine synthase

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20201120

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    24962925..24992930 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005260763.3XP_005260820.1  adipocyte plasma membrane-associated protein isoform X1

    UniProtKB/Swiss-Prot
    Q9HDC9
    Conserved Domains (3) summary
    cd05819
    Location:102137
    NHL; NHL repeat [structural motif]
    cl18310
    Location:96282
    NHL; NHL repeat unit of beta-propeller proteins
    cl22863
    Location:201287
    Str_synth; Strictosidine synthase
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