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0610010F05Rik RIKEN cDNA 0610010F05 gene [ Mus musculus (house mouse) ]

Gene ID: 71675, updated on 31-Jan-2019

Summary

Official Symbol
0610010F05Rikprovided by MGI
Official Full Name
RIKEN cDNA 0610010F05 geneprovided by MGI
Primary source
MGI:MGI:1918925
See related
Ensembl:ENSMUSG00000042208
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kiaa1841; mKIAA1841
Expression
Biased expression in CNS E18 (RPKM 9.0), CNS E14 (RPKM 7.6) and 14 other tissues See more
Orthologs

Genomic context

See 0610010F05Rik in Genome Data Viewer
Location:
11; 11 A3.2
Exon count:
28
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (23564949..23634991, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (23473776..23533631, complement)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700093K21 gene Neighboring gene selenoprotein K, pseudogene 1 Neighboring gene peroxisomal biogenesis factor 13 Neighboring gene pseudouridylate synthase 10 Neighboring gene reticuloendotheliosis oncogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein KIAA1841

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347242.1NP_001334171.1  uncharacterized protein KIAA1841 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, lacks a portion of the 5' coding region and initiates translation at a downstream start codon, compared to variant 1. It encodes isoform 2, which is shorter at the N-terminus, compared to isoform 1.
    Source sequence(s)
    AI642567, AL672049
    UniProtKB/Swiss-Prot
    Q68FF0
  2. NM_027860.3NP_082136.2  uncharacterized protein KIAA1841 isoform 1

    See identical proteins and their annotated locations for NP_082136.2

    Status: VALIDATED

    Source sequence(s)
    AK053838, BB522605, BC072622, BC079876, BP759684
    Consensus CDS
    CCDS36119.1
    UniProtKB/Swiss-Prot
    Q68FF0
    Related
    ENSMUSP00000136118.1, ENSMUST00000180260.7
    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)

RNA

  1. NR_156450.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL672049

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    23564949..23634991 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006514811.3XP_006514874.1  uncharacterized protein KIAA1841 isoform X3

    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)
  2. XM_006514810.3XP_006514873.1  uncharacterized protein KIAA1841 isoform X2

    UniProtKB/TrEMBL
    M0QWF3
    Related
    ENSMUSP00000137799.1, ENSMUST00000155903.7
    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)
  3. XM_017314769.1XP_017170258.1  uncharacterized protein KIAA1841 isoform X4

  4. XM_006514808.3XP_006514871.1  uncharacterized protein KIAA1841 isoform X1

    See identical proteins and their annotated locations for XP_006514871.1

    UniProtKB/Swiss-Prot
    Q68FF0
    Related
    ENSMUSP00000044265.6, ENSMUST00000043356.12
    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)
  5. XM_006514807.3XP_006514870.1  uncharacterized protein KIAA1841 isoform X1

    See identical proteins and their annotated locations for XP_006514870.1

    UniProtKB/Swiss-Prot
    Q68FF0
    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)
  6. XM_017314770.1XP_017170259.1  uncharacterized protein KIAA1841 isoform X5

    UniProtKB/Swiss-Prot
    Q68FF0
    Related
    ENSMUSP00000090955.4, ENSMUST00000093267.10
  7. XM_011243749.1XP_011242051.1  uncharacterized protein KIAA1841 isoform X1

    See identical proteins and their annotated locations for XP_011242051.1

    UniProtKB/Swiss-Prot
    Q68FF0
    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)
  8. XM_017314768.1XP_017170257.1  uncharacterized protein KIAA1841 isoform X1

    UniProtKB/Swiss-Prot
    Q68FF0
    Conserved Domains (1) summary
    pfam11822
    Location:147449
    DUF3342; Domain of unknown function (DUF3342)
  9. XM_011243750.2XP_011242052.1  uncharacterized protein KIAA1841 isoform X6

    Conserved Domains (2) summary
    smart00717
    Location:2160
    SANT; SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
    cd00167
    Location:2159
    SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

RNA

  1. XR_380982.3 RNA Sequence

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