U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Tmem242 transmembrane protein 242 [ Mus musculus (house mouse) ]

Gene ID: 70544, updated on 5-Mar-2024

Summary

Official Symbol
Tmem242provided by MGI
Official Full Name
transmembrane protein 242provided by MGI
Primary source
MGI:MGI:1917794
See related
Ensembl:ENSMUSG00000004945 AllianceGenome:MGI:1917794
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110008A10Rik; 2310046K16Rik; 5730437N04Rik
Summary
Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TMEM242 (transmembrane protein 242). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 19.1), placenta adult (RPKM 12.2) and 28 other tissues See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Location:
17 A1; 17 3.16 cM
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (5461139..5490535, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (5410864..5440260, complement)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene AT-rich interaction domain 1B Neighboring gene STARR-seq mESC enhancer starr_41683 Neighboring gene tubulin, alpha 1B pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E10929 Neighboring gene STARR-seq mESC enhancer starr_41685 Neighboring gene predicted gene, 34854 Neighboring gene STARR-seq mESC enhancer starr_41691 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:5295725-5295926 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:5296016-5296125 Neighboring gene STARR-positive B cell enhancer mm9_chr17:5303477-5303778 Neighboring gene STARR-positive B cell enhancer mm9_chr17:5429429-5429729 Neighboring gene CapStarr-seq enhancer MGSCv37_chr17:5440198-5440381 Neighboring gene predicted gene 29050 Neighboring gene lactate dehydrogenase A-like 6B Neighboring gene STARR-positive B cell enhancer ABC_E3179 Neighboring gene predicted gene, 52310 Neighboring gene non-SMC condensin II complex, subunit H2 pseudogene Neighboring gene zinc finger, DHHC domain containing 14

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in mitochondrial proton-transporting ATP synthase complex assembly ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in mitochondrial inner membrane ISO
Inferred from Sequence Orthology
more info
 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
transmembrane protein 242
Names
UPF0463 transmembrane protein C6orf35 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_027457.4NP_081733.3  transmembrane protein 242

    See identical proteins and their annotated locations for NP_081733.3

    Status: VALIDATED

    Source sequence(s)
    AK043276, AW555272, BB817862, BY013779
    Consensus CDS
    CCDS49930.1
    UniProtKB/Swiss-Prot
    Q8C2T2, Q8CEX9, Q8VCR3, Q9CYJ2, Q9D1H4
    Related
    ENSMUSP00000005053.8, ENSMUST00000005053.14
    Conserved Domains (1) summary
    pfam07096
    Location:10123
    DUF1358; Protein of unknown function (DUF1358)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    5461139..5490535 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)