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Gpatch2l G patch domain containing 2 like [ Mus musculus (house mouse) ]

Gene ID: 70373, updated on 12-May-2024

Summary

Official Symbol
Gpatch2lprovided by MGI
Official Full Name
G patch domain containing 2 likeprovided by MGI
Primary source
MGI:MGI:1917623
See related
Ensembl:ENSMUSG00000021254 AllianceGenome:MGI:1917623
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kiaa1152; 1700020O03Rik; 4732487G21Rik; A630090I05Rik
Summary
Orthologous to human GPATCH2L (G-patch domain containing 2 like). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 5.0), CNS E14 (RPKM 4.5) and 28 other tissues See more
Orthologs
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Genomic context

See Gpatch2l in Genome Data Viewer
Location:
12 D2; 12 40.36 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (86288569..86341439)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (86241795..86294657)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 43 Neighboring gene STARR-seq mESC enhancer starr_32794 Neighboring gene predicted gene 805 Neighboring gene predicted gene, 32473 Neighboring gene STARR-seq mESC enhancer starr_32801 Neighboring gene STARR-positive B cell enhancer ABC_E742 Neighboring gene STARR-positive B cell enhancer ABC_E4037 Neighboring gene predicted gene, 40481 Neighboring gene STARR-seq mESC enhancer starr_32803 Neighboring gene predicted gene, 32666 Neighboring gene predicted gene, 40483 Neighboring gene estrogen related receptor, beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
G patch domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324488.1NP_001311417.1  G patch domain-containing protein 2-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK031712, AK129299, BE685832, BY146148
    Consensus CDS
    CCDS88376.1
    UniProtKB/TrEMBL
    Q3UGI2
    Related
    ENSMUSP00000065858.6, ENSMUST00000071106.6
  2. NM_027405.3NP_081681.2  G patch domain-containing protein 2-like isoform 1

    See identical proteins and their annotated locations for NP_081681.2

    Status: VALIDATED

    Source sequence(s)
    BC058256, BY146148
    Consensus CDS
    CCDS26065.1
    UniProtKB/Swiss-Prot
    Q6PE65, Q6ZPW9, Q8CD08, Q9DA49
    UniProtKB/TrEMBL
    Q3UGI2
    Related
    ENSMUSP00000152284.2, ENSMUST00000221368.2

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    86288569..86341439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516219.4XP_006516282.1  G patch domain-containing protein 2-like isoform X1

    UniProtKB/TrEMBL
    Q3UGI2
  2. XM_006516220.5XP_006516283.1  G patch domain-containing protein 2-like isoform X2

    UniProtKB/TrEMBL
    Q3UGI2
  3. XM_036157609.1XP_036013502.1  G patch domain-containing protein 2-like isoform X4

  4. XM_006516222.4XP_006516285.1  G patch domain-containing protein 2-like isoform X5

  5. XM_030246903.2XP_030102763.1  G patch domain-containing protein 2-like isoform X3

  6. XM_017315181.3XP_017170670.1  G patch domain-containing protein 2-like isoform X6