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Gpatch2l G patch domain containing 2 like [ Mus musculus (house mouse) ]

Gene ID: 70373, updated on 8-Nov-2020

Summary

Official Symbol
Gpatch2lprovided by MGI
Official Full Name
G patch domain containing 2 likeprovided by MGI
Primary source
MGI:MGI:1917623
See related
Ensembl:ENSMUSG00000021254
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Kiaa1152; 1700020O03Rik; 4732487G21Rik; A630090I05Rik
Expression
Ubiquitous expression in CNS E18 (RPKM 5.0), CNS E14 (RPKM 4.5) and 28 other tissues See more
Orthologs
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Genomic context

See Gpatch2l in Genome Data Viewer
Location:
12; 12 D2
Exon count:
13
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (86288569..86341439)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (86241795..86294657)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 12 NC_000078.5 (87582828..87632318)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene intraflagellar transport 43 Neighboring gene predicted gene 805 Neighboring gene predicted gene, 32473 Neighboring gene predicted gene, 40481 Neighboring gene predicted gene, 32666 Neighboring gene predicted gene, 40483 Neighboring gene estrogen related receptor, beta

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
G patch domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001324488.1NP_001311417.1  G patch domain-containing protein 2-like isoform 2

    Status: VALIDATED

    Source sequence(s)
    AK031712, AK129299, BE685832, BY146148
    Consensus CDS
    CCDS88376.1
    UniProtKB/Swiss-Prot
    Q6PE65
    Related
    ENSMUSP00000065858.5, ENSMUST00000071106.5
  2. NM_027405.3NP_081681.2  G patch domain-containing protein 2-like isoform 1

    See identical proteins and their annotated locations for NP_081681.2

    Status: VALIDATED

    Source sequence(s)
    BC058256, BY146148
    Consensus CDS
    CCDS26065.1
    UniProtKB/Swiss-Prot
    Q6PE65
    Related
    ENSMUSP00000152284.1, ENSMUST00000221368.1

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    86288569..86341439
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516219.4XP_006516282.1  G patch domain-containing protein 2-like isoform X1

  2. XM_006516220.5XP_006516283.1  G patch domain-containing protein 2-like isoform X2

  3. XM_036157609.1XP_036013502.1  G patch domain-containing protein 2-like isoform X4

  4. XM_006516222.4XP_006516285.1  G patch domain-containing protein 2-like isoform X5

  5. XM_030246903.2XP_030102763.1  G patch domain-containing protein 2-like isoform X3

  6. XM_017315181.3XP_017170670.1  G patch domain-containing protein 2-like isoform X6

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