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GPATCH2L G-patch domain containing 2 like [ Homo sapiens (human) ]

Gene ID: 55668, updated on 23-Nov-2021

Summary

Official Symbol
GPATCH2Lprovided by HGNC
Official Full Name
G-patch domain containing 2 likeprovided by HGNC
Primary source
HGNC:HGNC:20210
See related
Ensembl:ENSG00000089916
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C14orf118
Expression
Ubiquitous expression in bone marrow (RPKM 2.9), testis (RPKM 2.4) and 25 other tissues See more
Orthologs
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Genomic context

See GPATCH2L in Genome Data Viewer
Location:
14q24.3
Exon count:
15
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (76151912..76214473)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (76618265..76680686)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene ubiquitin conjugating enzyme E2 L3 pseudogene Neighboring gene intraflagellar transport 43 Neighboring gene uncharacterized LOC105370573 Neighboring gene uncharacterized LOC105370575 Neighboring gene Sharpr-MPRA regulatory region 6100 Neighboring gene estrogen related receptor beta

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Framingham Heart Study 100K Project: genome-wide associations for blood pressure and arterial stiffness.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ10033, FLJ20689, FLJ30822, MGC61896

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
G patch domain-containing protein 2-like

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001322026.2NP_001308955.1  G patch domain-containing protein 2-like isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC016526
  2. NM_001322027.3NP_001308956.1  G patch domain-containing protein 2-like isoform 5

    Status: VALIDATED

    Source sequence(s)
    AC016526
    Related
    ENSP00000451587.1, ENST00000557263.5
  3. NM_001322028.2NP_001308957.1  G patch domain-containing protein 2-like isoform 6

    Status: VALIDATED

    Source sequence(s)
    AC016526
  4. NM_001322029.2NP_001308958.1  G patch domain-containing protein 2-like isoform 7

    Status: VALIDATED

    Source sequence(s)
    AC016526
  5. NM_001322030.3NP_001308959.1  G patch domain-containing protein 2-like isoform 8

    Status: VALIDATED

    Source sequence(s)
    AC016526
  6. NM_001322031.2NP_001308960.1  G patch domain-containing protein 2-like isoform 9

    Status: VALIDATED

    Source sequence(s)
    AC016526
  7. NM_001322032.2NP_001308961.1  G patch domain-containing protein 2-like isoform 10

    Status: VALIDATED

    Source sequence(s)
    AC016526
  8. NM_017926.4NP_060396.2  G patch domain-containing protein 2-like isoform 1

    See identical proteins and their annotated locations for NP_060396.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (1).
    Source sequence(s)
    AB032978, AC016526, AK000696
    Consensus CDS
    CCDS9848.1
    UniProtKB/Swiss-Prot
    Q9NWQ4
    UniProtKB/TrEMBL
    A0A024R6E4
    Related
    ENSP00000261530.7, ENST00000261530.12
  9. NM_017972.3NP_060442.2  G patch domain-containing protein 2-like isoform 2

    See identical proteins and their annotated locations for NP_060442.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR and lacks an exon and contains an alternate exon in the coding region, but maintains the reading frame, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AB032978, AC016526, AK000696, AK000895
    Consensus CDS
    CCDS9849.1
    UniProtKB/Swiss-Prot
    Q9NWQ4
    UniProtKB/TrEMBL
    A0A024R6J0
    Related
    ENSP00000480608.1, ENST00000621494.1

RNA

  1. NR_110314.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) lacks an exon at the 5' end and lacks an internal exon, and contains two alternate internal exons, compared to variant 1. This variant is represented as non-coding because the use of the 5'-most expected translational start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AB032978, AC016526, BC038835

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    76151912..76214473
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006720191.2XP_006720254.1  G patch domain-containing protein 2-like isoform X4

    See identical proteins and their annotated locations for XP_006720254.1

    UniProtKB/TrEMBL
    A0A024R6J0
    Related
    ENSP00000323775.5, ENST00000312858.9
  2. XM_017021433.1XP_016876922.1  G patch domain-containing protein 2-like isoform X8

    Related
    ENSP00000452180.1, ENST00000554375.5
  3. XM_017021428.1XP_016876917.1  G patch domain-containing protein 2-like isoform X2

  4. XM_017021427.1XP_016876916.1  G patch domain-containing protein 2-like isoform X1

  5. XM_017021431.1XP_016876920.1  G patch domain-containing protein 2-like isoform X6

  6. XM_017021432.1XP_016876921.1  G patch domain-containing protein 2-like isoform X7

  7. XM_017021430.1XP_016876919.1  G patch domain-containing protein 2-like isoform X5

  8. XM_017021429.1XP_016876918.1  G patch domain-containing protein 2-like isoform X3

RNA

  1. XR_001750418.1 RNA Sequence

  2. XR_001750414.1 RNA Sequence

  3. XR_001750417.1 RNA Sequence

  4. XR_001750415.1 RNA Sequence

  5. XR_001750416.1 RNA Sequence

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