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Ttc9 tetratricopeptide repeat domain 9 [ Mus musculus (house mouse) ]

Gene ID: 69480, updated on 5-Mar-2024

Summary

Official Symbol
Ttc9provided by MGI
Official Full Name
tetratricopeptide repeat domain 9provided by MGI
Primary source
MGI:MGI:1916730
See related
Ensembl:ENSMUSG00000042734 AllianceGenome:MGI:1916730
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
This gene encodes a protein that contains three tetratricopeptide repeats. The human gene has been shown to be hormonally regulated in breast cancer cells and may play a role in cancer cell invasion and metastasis. [provided by RefSeq, Sep 2015]
Expression
Biased expression in cerebellum adult (RPKM 8.8), CNS E18 (RPKM 8.2) and 11 other tissues See more
Orthologs
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Genomic context

See Ttc9 in Genome Data Viewer
Location:
12 D1; 12 37.85 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (81678023..81714331)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (81631249..81667557)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene a disintegrin and metallopeptidase domain 21 Neighboring gene STARR-positive B cell enhancer ABC_E1443 Neighboring gene mediator complex subunit 6 Neighboring gene STARR-seq mESC enhancer starr_32676 Neighboring gene 40S ribosomal protein S23 pseudogene Neighboring gene STARR-seq mESC enhancer starr_32677 Neighboring gene ragulator complex protein LAMTOR2 pseudogene Neighboring gene mitogen-activated protein kinase kinase kinase 9

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (1)  1 citation
  • Endonuclease-mediated (1) 

General protein information

Preferred Names
tetratricopeptide repeat protein 9A
Names
TPR repeat protein 9A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033149.3NP_001028321.1  tetratricopeptide repeat protein 9A

    See identical proteins and their annotated locations for NP_001028321.1

    Status: REVIEWED

    Source sequence(s)
    AC125351, AK133456, BE947764
    Consensus CDS
    CCDS26024.1
    UniProtKB/Swiss-Prot
    B2RTC7, Q3TTA0, Q3V038, Q6A0A0, Q8K336
    Related
    ENSMUSP00000048590.6, ENSMUST00000036116.6
    Conserved Domains (3) summary
    sd00006
    Location:127156
    TPR; TPR repeat [structural motif]
    pfam00515
    Location:162194
    TPR_1; Tetratricopeptide repeat
    pfam13414
    Location:124192
    TPR_11; TPR repeat

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    81678023..81714331
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)