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1810010H24Rik RIKEN cDNA 1810010H24 gene [ Mus musculus (house mouse) ]

Gene ID: 69066, updated on 2-Nov-2024

Summary

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Official Symbol
1810010H24Rikprovided by MGI
Official Full Name
RIKEN cDNA 1810010H24 geneprovided by MGI
Primary source
MGI:MGI:1916316
See related
Ensembl:ENSMUSG00000078607 AllianceGenome:MGI:1916316
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Is expressed in diencephalon lateral wall ventricular layer; medulla oblongata basal plate ventricular layer; olfactory epithelium; pons ventricular layer; and spinal cord ventricular layer. Orthologous to human C17orf58 (chromosome 17 open reading frame 58). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Broad expression in lung adult (RPKM 14.0), liver E18 (RPKM 5.7) and 17 other tissues See more
Orthologs
human all
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Genomic context

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See 1810010H24Rik in Genome Data Viewer
Location:
11 E1; 11 70.1 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (106913499..106921269)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (107023269..107030443)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E4007 Neighboring gene predicted gene, 39424 Neighboring gene mediator of cell motility 1 pseudogene Neighboring gene STARR-seq mESC enhancer starr_30953 Neighboring gene nuclear encoded tRNA arginine 1 (anticodon CCG) Neighboring gene STARR-positive B cell enhancer ABC_E9377 Neighboring gene STARR-positive B cell enhancer mm9_chr11:106905708-106906009 Neighboring gene bromodomain PHD finger transcription factor Neighboring gene STARR-positive B cell enhancer ABC_E2373 Neighboring gene STARR-positive B cell enhancer ABC_E5290 Neighboring gene STARR-positive B cell enhancer ABC_E10725 Neighboring gene STARR-seq mESC enhancer starr_30956 Neighboring gene STARR-positive B cell enhancer ABC_E10726 Neighboring gene STARR-seq mESC enhancer starr_30959 Neighboring gene STARR-seq mESC enhancer starr_30962 Neighboring gene predicted gene 11715 Neighboring gene nucleolar protein 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. The Vertebrate Genome Annotation browser 10 years on. Harrow JL, et al. Nucleic Acids Res, 2014 Jan. PMID 24316575, Free PMC Article
  2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548
  3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
  4. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  5. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

See all (13) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Markers

Homology

Clone Names

  • MGC123578

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
UPF0450 protein C17orf58 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001163473.2 → NP_001156945.2  UPF0450 protein C17orf58 homolog isoform 1 precursor

    Status: VALIDATED

    Source sequence(s)
    AL596116
    Consensus CDS
    CCDS83916.1
    Conserved Domains (2) summary
    PHA03247
    Location:27 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:154 → 284
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  2. NM_001372502.1 → NP_001359431.1  UPF0450 protein C17orf58 homolog isoform 2 precursor

    Status: VALIDATED

    Source sequence(s)
    AL596116
    UniProtKB/Swiss-Prot
    A0A1B0GR98, Q08AU9
    Related
    ENSMUSP00000147434.2, ENSMUST00000140447.4
    Conserved Domains (2) summary
    PHA03247
    Location:27 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:154 → 283
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  3. NM_001372503.1 → NP_001359432.1  UPF0450 protein C17orf58 homolog isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AL596116
    Conserved Domains (2) summary
    PHA03247
    Location:27 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:154 → 244
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  4. NM_001372504.1 → NP_001359433.1  UPF0450 protein C17orf58 homolog isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AL596116
    Conserved Domains (2) summary
    PHA03247
    Location:27 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:154 → 243
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    106913499..106921269
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036156944.1 → XP_036012837.1  UPF0450 protein C17orf58 homolog isoform X1

    Conserved Domains (2) summary
    PHA03247
    Location:95 → 264
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:251 → 432
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  2. XM_017314738.3 → XP_017170227.2  UPF0450 protein C17orf58 homolog isoform X5

    Conserved Domains (3) summary
    PHA03307
    Location:21 → 221
    PHA03307; transcriptional regulator ICP4; Provisional
    PRK12323
    Location:132 → 250
    PRK12323; DNA polymerase III subunit gamma/tau
    cl02512
    Location:233 → 323
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  3. XM_036156946.1 → XP_036012839.1  UPF0450 protein C17orf58 homolog isoform X3

    Conserved Domains (2) summary
    PHA03247
    Location:95 → 246
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:233 → 414
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  4. XM_036156945.1 → XP_036012838.1  UPF0450 protein C17orf58 homolog isoform X2

    Conserved Domains (2) summary
    PHA03247
    Location:95 → 264
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:251 → 431
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  5. XM_036156949.1 → XP_036012842.1  UPF0450 protein C17orf58 homolog isoform X8

    Conserved Domains (2) summary
    PHA03247
    Location:45 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:172 → 353
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  6. XM_017314735.2 → XP_017170224.1  UPF0450 protein C17orf58 homolog isoform X6

    Conserved Domains (2) summary
    PHA03247
    Location:27 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:154 → 243
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  7. XM_036156947.1 → XP_036012840.1  UPF0450 protein C17orf58 homolog isoform X4

    Conserved Domains (2) summary
    PHA03247
    Location:27 → 167
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:154 → 334
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  8. XM_036156948.1 → XP_036012841.1  UPF0450 protein C17orf58 homolog isoform X7

    Conserved Domains (2) summary
    PHA03247
    Location:46 → 197
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:184 → 364
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...

  9. XM_036156950.1 → XP_036012843.1  UPF0450 protein C17orf58 homolog isoform X9

    Conserved Domains (2) summary
    PHA03247
    Location:2 → 131
    PHA03247; large tegument protein UL36; Provisional
    cl02512
    Location:136 → 317
    NTR_like; NTR_like domain; a beta barrel with an oligosaccharide/oligonucleotide-binding fold found in netrins, complement proteins, tissue inhibitors of metalloproteases (TIMP), and procollagen C-proteinase enhancers (PCOLCE), amongst others. In netrins, the ...
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q08AU9.2 GenPept UniProtKB/Swiss-Prot:Q08AU9

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