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Ssu72 Ssu72 RNA polymerase II CTD phosphatase homolog (yeast) [ Mus musculus (house mouse) ]

Gene ID: 68991, updated on 12-Aug-2019

Summary

Official Symbol
Ssu72provided by MGI
Official Full Name
Ssu72 RNA polymerase II CTD phosphatase homolog (yeast)provided by MGI
Primary source
MGI:MGI:1916241
See related
Ensembl:ENSMUSG00000029038
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1190002E22Rik; 1500011L16Rik; 2610101M12Rik
Expression
Ubiquitous expression in adrenal adult (RPKM 59.1), colon adult (RPKM 50.6) and 28 other tissues See more
Orthologs

Genomic context

See Ssu72 in Genome Data Viewer
Location:
4; 4 E2
Exon count:
5
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (155704815..155733879)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 4 NC_000070.5 (155078924..155107988)

Chromosome 4 - NC_000070.6Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 23 Neighboring gene mindbomb E3 ubiquitin protein ligase 2 Neighboring gene fibronectin type III domain containing 10 Neighboring gene RIKEN cDNA 1500002C15 gene Neighboring gene predicted gene, 22573 Neighboring gene transmembrane protein 240 Neighboring gene ATPase family, AAA domain containing 3A

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Pathways from PubChem

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
RNA polymerase II CTD heptapeptide repeat phosphatase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
RNA polymerase II CTD heptapeptide repeat phosphatase activity ISO
Inferred from Sequence Orthology
more info
 
hydrolase activity IEA
Inferred from Electronic Annotation
more info
 
phosphoprotein phosphatase activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
dephosphorylation of RNA polymerase II C-terminal domain IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
dephosphorylation of RNA polymerase II C-terminal domain ISO
Inferred from Sequence Orthology
more info
 
mRNA polyadenylation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mRNA polyadenylation ISO
Inferred from Sequence Orthology
more info
 
mRNA processing IEA
Inferred from Electronic Annotation
more info
 
termination of RNA polymerase II transcription IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
cytosol ISO
Inferred from Sequence Orthology
more info
 
mRNA cleavage and polyadenylation specificity factor complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
RNA polymerase II subunit A C-terminal domain phosphatase SSU72
Names
CTD phosphatase SSU72
NP_081175.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026899.3NP_081175.2  RNA polymerase II subunit A C-terminal domain phosphatase SSU72

    See identical proteins and their annotated locations for NP_081175.2

    Status: VALIDATED

    Source sequence(s)
    AK019168, BB867926, BU842478, BY237911
    Consensus CDS
    CCDS19036.1
    UniProtKB/Swiss-Prot
    Q9CY97
    Related
    ENSMUSP00000030905.2, ENSMUST00000030905.8
    Conserved Domains (1) summary
    pfam04722
    Location:6194
    Ssu72; Ssu72-like protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000070.6 Reference GRCm38.p6 C57BL/6J

    Range
    155704815..155733879
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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