Carmil1 capping protein regulator and myosin 1 linker 1 [Mus musculus (house mouse)] - Gene

Summary

Official Symbol: Carmil1provided by MGI
Official Full Name: capping protein regulator and myosin 1 linker 1provided by MGI
Primary source: MGI:MGI:1915982
See related: Ensembl:ENSMUSG00000021338 AllianceGenome:MGI:1915982
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Mus musculus
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as: CARMIL; CARML1; Lrrc16; Lrrc16a; D130057M20; 1110037D04Rik
Summary: Involved in several processes, including positive regulation of lamellipodium organization; positive regulation of substrate adhesion-dependent cell spreading; and positive regulation of supramolecular fiber organization. Located in lamellipodium. Part of filamentous actin. Is expressed in palatal shelf; skeleton; telencephalon; and vibrissa. Orthologous to human CARMIL1 (capping protein regulator and myosin 1 linker 1). [provided by Alliance of Genome Resources, Nov 2024]
Expression: Ubiquitous expression in testis adult (RPKM 3.6), CNS E18 (RPKM 3.4) and 28 other tissues See more
Orthologs: human all
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Genomic context

Location:: 13 A3.1; 13 10.05 cM

Exon count:: 42

Annotation release	Status	Assembly	Chr	Location
RS_2024_02	current	GRCm39 (GCF_000001635.27)	13	NC_000079.7 (24196464..24464983, complement)
108.20200622	previous assembly	GRCm38.p6 (GCF_000001635.26)	13	NC_000079.6 (24012481..24280802, complement)

Chromosome 13 - NC_000079.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
Description: RNA profiling data sets generated by the Mouse ENCODE project.
BioProject: PRJNA66167
Publication: PMID 25409824
Analysis date: n/a

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Expression of the capping-protein-binding region of CARMIL (also known as LRRC16A) impaired spindle migration and polar body extrusion during oocyte maturation and decreased the density of the cytoplasmic actin mesh
Title: Actin-capping proteins play essential roles in the asymmetric division of maturing mouse oocytes.
Our data argue that a large pool of freely diffusing, inactive capping protein (CP:V-1) feeds, via CARMIL-driven complex exchange, the formation of weak-capping complexes (CP:CARMIL) at the plasma membrane of protruding edges.
Title: Capping protein regulatory cycle driven by CARMIL and V-1 may promote actin network assembly at protruding edges.
CARMIL leading edge localization depends on a non-canonical PH domain and dimerization.
Title: CARMIL leading edge localization depends on a non-canonical PH domain and dimerization.
the isolated CAH3 domain of CARMIL (and presumably the intact molecule as well) possesses the ability to uncap CP-capped actin filaments
Title: Direct observation of the uncapping of capping protein-capped actin filaments by CARMIL homology domain 3.
mCARMIL is a key regulator of CP and has profound effects on cell behavior.
Title: Mammalian CARMIL inhibits actin filament capping by capping protein.

Submit: New GeneRIF Correction

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics (MGI)

Endonuclease-mediated (2)
Targeted (1)

Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Markers

31.MMHAP23FLC4.seq (e-PCR)
- UniSTS:160276

AI425970 (e-PCR)
- UniSTS:160278

RH124520 (e-PCR)
- UniSTS:161342

RH126485 (e-PCR)
- UniSTS:163193

NoName (e-PCR)
- UniSTS:236984

Gene Ontology Provided by MGI

Function	Evidence Code	Pubs
enables protein-containing complex binding	IMP Inferred from Mutant Phenotype more info	PubMed
enables protein-containing complex binding	ISO Inferred from Sequence Orthology more info

Process	Evidence Code	Pubs
involved_in actin filament network formation	ISO Inferred from Sequence Orthology more info
involved_in actin filament network formation	ISS Inferred from Sequence or Structural Similarity more info
involved_in barbed-end actin filament uncapping	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in cell migration	IBA Inferred from Biological aspect of Ancestor more info
involved_in cell migration	ISO Inferred from Sequence Orthology more info
involved_in cell migration	ISS Inferred from Sequence or Structural Similarity more info
involved_in establishment or maintenance of cell polarity	ISS Inferred from Sequence or Structural Similarity more info
involved_in lamellipodium assembly	ISO Inferred from Sequence Orthology more info
involved_in lamellipodium assembly	ISS Inferred from Sequence or Structural Similarity more info
involved_in macropinocytosis	ISO Inferred from Sequence Orthology more info
involved_in macropinocytosis	ISS Inferred from Sequence or Structural Similarity more info
involved_in negative regulation of barbed-end actin filament capping	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of actin filament polymerization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of cell migration	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of cell migration	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of cell migration	ISS Inferred from Sequence or Structural Similarity more info
involved_in positive regulation of lamellipodium organization	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of lamellipodium organization	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of stress fiber assembly	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of stress fiber assembly	ISO Inferred from Sequence Orthology more info
involved_in positive regulation of substrate adhesion-dependent cell spreading	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of substrate adhesion-dependent cell spreading	ISO Inferred from Sequence Orthology more info
involved_in regulation of Arp2/3 complex-mediated actin nucleation	IBA Inferred from Biological aspect of Ancestor more info
involved_in ruffle organization	ISO Inferred from Sequence Orthology more info
involved_in ruffle organization	ISS Inferred from Sequence or Structural Similarity more info
involved_in urate metabolic process	ISO Inferred from Sequence Orthology more info
involved_in urate metabolic process	ISS Inferred from Sequence or Structural Similarity more info

Component	Evidence Code	Pubs
located_in cell leading edge	ISO Inferred from Sequence Orthology more info
located_in cytoplasm	ISS Inferred from Sequence or Structural Similarity more info
located_in cytosol	IEA Inferred from Electronic Annotation more info
located_in cytosol	ISO Inferred from Sequence Orthology more info
part_of filamentous actin	IDA Inferred from Direct Assay more info	PubMed
located_in intermediate filament cytoskeleton	ISS Inferred from Sequence or Structural Similarity more info
is_active_in lamellipodium	IBA Inferred from Biological aspect of Ancestor more info
located_in lamellipodium	IDA Inferred from Direct Assay more info	PubMed
located_in lamellipodium	ISO Inferred from Sequence Orthology more info
located_in lamellipodium	ISS Inferred from Sequence or Structural Similarity more info
located_in macropinosome	ISO Inferred from Sequence Orthology more info
located_in macropinosome	ISS Inferred from Sequence or Structural Similarity more info
located_in nuclear speck	IEA Inferred from Electronic Annotation more info
located_in nuclear speck	ISO Inferred from Sequence Orthology more info
located_in nucleoplasm	ISO Inferred from Sequence Orthology more info
located_in nucleus	ISS Inferred from Sequence or Structural Similarity more info
is_active_in plasma membrane	IBA Inferred from Biological aspect of Ancestor more info
located_in plasma membrane	ISO Inferred from Sequence Orthology more info
located_in plasma membrane	ISS Inferred from Sequence or Structural Similarity more info

General protein information

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Preferred Names: F-actin-uncapping protein LRRC16A

Names: CARMIL homolog; capping protein regulator and myosin 1 linker protein 1; capping protein, Arp2/3 and myosin-I linker homolog 1; capping protein, Arp2/3 and myosin-I linker protein 1; leucine rich repeat containing 16; leucine rich repeat containing 16A; leucine-rich repeat-containing protein 16A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001311122.1 → NP_001298051.1 F-actin-uncapping protein LRRC16A isoform 2

Status: VALIDATED

Description

Transcript Variant: This variant (2) lacks an alternate in-frame exon in the central coding region and contains an alternate 3' exon, compared to variant 1. The encoded isoform (2) is shorter and has a distinct C-terminus, compared to isoform 1.

Source sequence(s)

AL590864, AL606464, AL683873

Consensus CDS

CCDS79171.1

UniProtKB/TrEMBL

D3Z030

Related

ENSMUSP00000106028.3, ENSMUST00000110398.8

Conserved Domains (5) summary

PHA02682
Location:1109 → 1314

PHA02682; ORF080 virion core protein; Provisional

COG4886
Location:312 → 581

LRR; Leucine-rich repeat (LRR) protein [Transcription]

cd00116
Location:281 → 595

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:786 → 1076

CARMIL_C; CARMIL C-terminus
NM_001384122.1 → NP_001371051.1 F-actin-uncapping protein LRRC16A isoform 3

Status: VALIDATED

Source sequence(s)

AL590864, AL606464, AL683873

Conserved Domains (5) summary

PHA02682
Location:1109 → 1314

PHA02682; ORF080 virion core protein; Provisional

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:786 → 1076

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:281 → 595

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
NM_026825.3 → NP_081101.3 F-actin-uncapping protein LRRC16A isoform 1

See identical proteins and their annotated locations for NP_081101.3

Status: VALIDATED

Description

Transcript Variant: This variant (1) encodes the longer isoform (1).

Source sequence(s)

AK004138, AK043591, AK051570, AY437876

Consensus CDS

CCDS36621.1

UniProtKB/Swiss-Prot

Q5NCM0, Q6EDY6, Q8BQ45, Q8BRS5, Q91YZ6

Related

ENSMUSP00000072662.6, ENSMUST00000072889.12

Conserved Domains (6) summary

PHA02682
Location:1113 → 1318

PHA02682; ORF080 virion core protein; Provisional

COG4886
Location:312 → 585

LRR; Leucine-rich repeat (LRR) protein [Transcription]

cd00116
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1080

CARMIL_C; CARMIL C-terminus

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

NC_000079.7 Reference GRCm39 C57BL/6J

Range

24196464..24464983 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_017315585.3 → XP_017171074.1 F-actin-uncapping protein LRRC16A isoform X7

Conserved Domains (5) summary

PHA03307
Location:997 → 1384

PHA03307; transcriptional regulator ICP4; Provisional

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:786 → 1075

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:281 → 595

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244335.4 → XP_011242637.1 F-actin-uncapping protein LRRC16A isoform X3

Conserved Domains (5) summary

PHA02682
Location:1115 → 1320

PHA02682; ORF080 virion core protein; Provisional

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:786 → 1081

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:281 → 595

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_017315584.3 → XP_017171073.1 F-actin-uncapping protein LRRC16A isoform X5

Conserved Domains (6) summary

PHA03307
Location:1001 → 1388

PHA03307; transcriptional regulator ICP4; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1079

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_017315586.3 → XP_017171075.1 F-actin-uncapping protein LRRC16A isoform X11

Conserved Domains (6) summary

PHA02682
Location:1113 → 1318

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1079

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244340.4 → XP_011242642.1 F-actin-uncapping protein LRRC16A isoform X12

Conserved Domains (6) summary

PHA03307
Location:1007 → 1323

PHA03307; transcriptional regulator ICP4; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1085

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244336.4 → XP_011242638.1 F-actin-uncapping protein LRRC16A isoform X8

Conserved Domains (6) summary

PHA02682
Location:1119 → 1324

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1085

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244334.4 → XP_011242636.1 F-actin-uncapping protein LRRC16A isoform X2

Conserved Domains (6) summary

PHA03307
Location:1007 → 1394

PHA03307; transcriptional regulator ICP4; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1085

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244333.4 → XP_011242635.1 F-actin-uncapping protein LRRC16A isoform X1

Conserved Domains (6) summary

PHA02682
Location:1119 → 1324

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1085

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244338.4 → XP_011242640.1 F-actin-uncapping protein LRRC16A isoform X10

See identical proteins and their annotated locations for XP_011242640.1

UniProtKB/Swiss-Prot

Q6EDY6

Conserved Domains (6) summary

PHA02682
Location:1119 → 1324

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1085

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_036158147.1 → XP_036014040.1 F-actin-uncapping protein LRRC16A isoform X9

Conserved Domains (6) summary

PHA02682
Location:1036 → 1241

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:165 → 192

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:224 → 255

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:707 → 1003

CARMIL_C; CARMIL C-terminus

pfam17888
Location:1 → 36

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:146 → 290

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_011244337.4 → XP_011242639.1 F-actin-uncapping protein LRRC16A isoform X9

Conserved Domains (6) summary

PHA02682
Location:1036 → 1241

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:165 → 192

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:224 → 255

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:707 → 1003

CARMIL_C; CARMIL C-terminus

pfam17888
Location:1 → 36

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:146 → 290

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_036158148.1 → XP_036014041.1 F-actin-uncapping protein LRRC16A isoform X14

Conserved Domains (5) summary

PHA03307
Location:997 → 1313

PHA03307; transcriptional regulator ICP4; Provisional

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:786 → 1076

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:281 → 595

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_006516741.4 → XP_006516804.1 F-actin-uncapping protein LRRC16A isoform X6

Conserved Domains (5) summary

PHA02682
Location:1109 → 1314

PHA02682; ORF080 virion core protein; Provisional

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:786 → 1075

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:281 → 595

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_030247393.2 → XP_030103253.1 F-actin-uncapping protein LRRC16A isoform X13

Conserved Domains (6) summary

PHA03307
Location:1001 → 1317

PHA03307; transcriptional regulator ICP4; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1079

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
XM_006516739.4 → XP_006516802.1 F-actin-uncapping protein LRRC16A isoform X4

Conserved Domains (6) summary

PHA02682
Location:1113 → 1318

PHA02682; ORF080 virion core protein; Provisional

sd00031
Location:248 → 275

LRR_1; leucine-rich repeat [structural motif]

sd00033
Location:307 → 338

LRR_RI; leucine-rich repeat [structural motif]

pfam16000
Location:790 → 1079

CARMIL_C; CARMIL C-terminus

pfam17888
Location:38 → 119

Carm_PH; Carmil pleckstrin homology domain

cl39015
Location:229 → 373

LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...

RNA

XR_001780807.3 RNA Sequence
XR_001780806.3 RNA Sequence
XR_001780808.3 RNA Sequence
XR_001780812.3 RNA Sequence
XR_004938063.1 RNA Sequence
XR_001780810.3 RNA Sequence
XR_001780811.3 RNA Sequence

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

NM_177807.2: Suppressed sequence

Description

NM_177807.2: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.