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1110032A03Rik RIKEN cDNA 1110032A03 gene [ Mus musculus (house mouse) ]

Gene ID: 68721, updated on 31-Jan-2019

Summary

Official Symbol
1110032A03Rikprovided by MGI
Official Full Name
RIKEN cDNA 1110032A03 geneprovided by MGI
Primary source
MGI:MGI:1915971
See related
Ensembl:ENSMUSG00000037971
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
c11orf1; 4930500N06Rik
Expression
Biased expression in testis adult (RPKM 65.0), genital fat pad adult (RPKM 10.5) and 14 other tissues See more
Orthologs

Genomic context

See 1110032A03Rik in Genome Data Viewer
Location:
9; 9 A5.3
Exon count:
7
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 9 NC_000075.6 (50762828..50771402, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 9 NC_000075.5 (50570933..50576257, complement)

Chromosome 9 - NC_000075.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 2310030G06 gene Neighboring gene heat shock protein 2 Neighboring gene crystallin, alpha B Neighboring gene ferredoxin-fold anticodon binding domain containing 1 Neighboring gene predicted gene, 38476 Neighboring gene asparagine-linked glycosylation 9 (alpha 1,2 mannosyltransferase) Neighboring gene protein phosphatase 2, regulatory subunit A, beta Neighboring gene salt inducible kinase 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
UPF0686 protein C11orf1 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001311073.2NP_001298002.1  UPF0686 protein C11orf1 homolog isoform 2

    See identical proteins and their annotated locations for NP_001298002.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate 5' terminal exon, which results in a different 5' UTR and use of an alternate start codon compared to variant 1. It encodes isoform 2, which is longer than and has a distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AK015671, AK043513, AK161835, BQ175429, BU609920
    Consensus CDS
    CCDS80996.1
    UniProtKB/Swiss-Prot
    Q9D131
    Related
    ENSMUSP00000046890.4, ENSMUST00000042576.10
    Conserved Domains (1) summary
    pfam06608
    Location:25164
    DUF1143; Protein of unknown function (DUF1143)
  2. NM_001361107.1NP_001348036.1  UPF0686 protein C11orf1 homolog isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC123614
    Conserved Domains (1) summary
    pfam06608
    Location:1125
    DUF1143; Protein of unknown function (DUF1143)
  3. NM_001361108.1NP_001348037.1  UPF0686 protein C11orf1 homolog isoform 4

    Status: VALIDATED

    Source sequence(s)
    AC123614
    Conserved Domains (1) summary
    pfam06608
    Location:1471
    DUF1143; Protein of unknown function (DUF1143)
  4. NM_023483.4NP_075972.2  UPF0686 protein C11orf1 homolog isoform 1

    See identical proteins and their annotated locations for NP_075972.2

    Status: VALIDATED

    Source sequence(s)
    AC123614, AK043513, AK161835, BQ175429, BU609920
    Consensus CDS
    CCDS23173.1
    UniProtKB/Swiss-Prot
    Q9D131
    Related
    ENSMUSP00000041803.2, ENSMUST00000042468.8
    Conserved Domains (1) summary
    pfam06608
    Location:1148
    DUF1143; Protein of unknown function (DUF1143)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000075.6 Reference GRCm38.p4 C57BL/6J

    Range
    50762828..50771402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006510579.3XP_006510642.1  UPF0686 protein C11orf1 homolog isoform X3

    UniProtKB/TrEMBL
    H3BL73
    Related
    ENSMUSP00000135679.1, ENSMUST00000176238.1
    Conserved Domains (1) summary
    pfam06608
    Location:1125
    DUF1143; Protein of unknown function (DUF1143)
  2. XM_006510578.3XP_006510641.1  UPF0686 protein C11orf1 homolog isoform X1

    Conserved Domains (1) summary
    pfam06608
    Location:25141
    DUF1143; Protein of unknown function (DUF1143)
  3. XM_017313556.1XP_017169045.1  UPF0686 protein C11orf1 homolog isoform X2

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