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Rmnd5a required for meiotic nuclear division 5 homolog A [ Mus musculus (house mouse) ]

Gene ID: 68477, updated on 24-Oct-2019

Summary

Official Symbol
Rmnd5aprovided by MGI
Official Full Name
required for meiotic nuclear division 5 homolog Aprovided by MGI
Primary source
MGI:MGI:1915727
See related
Ensembl:ENSMUSG00000002222
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Gid2; AJ237586; AW125795; MTA.D02.090; 1110007A06Rik
Expression
Ubiquitous expression in thymus adult (RPKM 62.2), cerebellum adult (RPKM 22.9) and 28 other tissues See more
Orthologs

Genomic context

See Rmnd5a in Genome Data Viewer
Location:
6; 6 C1
Exon count:
9
Annotation release Status Assembly Chr Location
108 current GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (71388634..71440637, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (71338628..71390631, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene Cd8 alpha DNase I hypersensitive cluster CIII Neighboring gene Cd8 alpha DNase I hypersensitive cluster CII Neighboring gene CD8 antigen, alpha chain Neighboring gene predicted gene, 30582 Neighboring gene ring finger protein 103

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Homology

Clone Names

  • MGC59617

Gene Ontology Provided by MGI

Function Evidence Code Pubs
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
transferase activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to ubiquitin-protein transferase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
proteasome-mediated ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
ubiquitin-dependent protein catabolic process IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
GID complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
cytoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus ISO
Inferred from Sequence Orthology
more info
 
ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
E3 ubiquitin-protein ligase RMND5A
Names
protein RMD5 homolog A
NP_001342674.1
NP_077250.2

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355745.1NP_001342674.1  E3 ubiquitin-protein ligase RMND5A

    Status: VALIDATED

    Source sequence(s)
    AC154001, AC160090
    Consensus CDS
    CCDS20231.1
    Conserved Domains (2) summary
    COG5109
    Location:17391
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:153297
    CLTH; CTLH/CRA C-terminal to LisH motif domain
  2. NM_024288.2NP_077250.2  E3 ubiquitin-protein ligase RMND5A

    See identical proteins and their annotated locations for NP_077250.2

    Status: VALIDATED

    Source sequence(s)
    AC160090, AK148556, AK164384, CF748545
    Consensus CDS
    CCDS20231.1
    UniProtKB/Swiss-Prot
    Q80YQ8
    Related
    ENSMUSP00000002292.8, ENSMUST00000002292.14
    Conserved Domains (2) summary
    COG5109
    Location:17391
    COG5109; Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
    pfam10607
    Location:153297
    CLTH; CTLH/CRA C-terminal to LisH motif domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 108 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p6 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p6 C57BL/6J

    Range
    71388634..71440637 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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