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Fam166a family with sequence similarity 166, member A [ Mus musculus (house mouse) ]

Gene ID: 68222, updated on 24-Jan-2023

Summary

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Official Symbol
Fam166aprovided by MGI
Official Full Name
family with sequence similarity 166, member Aprovided by MGI
Primary source
MGI:MGI:3605773
See related
Ensembl:ENSMUSG00000026969 AllianceGenome:MGI:3605773
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
4931415M17
Summary
Predicted to be located in ciliary basal body. Orthologous to human FAM166A (family with sequence similarity 166 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 147.1) and liver E14 (RPKM 8.6) See more
Orthologs
human all
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Genomic context

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See Fam166a in Genome Data Viewer
Location:
2; 2 A3
Exon count:
12
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25104382..25112293)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25214699..25222281)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene torsin family 4, member A Neighboring gene negative elongation factor complex member B Neighboring gene predicted gene, 22572 Neighboring gene sperm tail PG rich repeat containing 3 Neighboring gene tubulin, beta 4B class IVB Neighboring gene solute carrier family 34 (sodium phosphate), member 3 Neighboring gene ring finger protein 224

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
  2. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  3. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  4. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
  5. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article

See all (9) citations in PubMed

See citations in PubMed for homologs of this gene provided by HomoloGene

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
  

General protein information

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Preferred Names
protein FAM166A
Names
4931415M17 mRNA

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026624.3 → NP_080900.1  protein FAM166A

    See identical proteins and their annotated locations for NP_080900.1

    Status: VALIDATED

    Source sequence(s)
    AK016459, BX631039
    Consensus CDS
    CCDS15752.1
    UniProtKB/Swiss-Prot
    Q9D4K5
    Related
    ENSMUSP00000028346.4, ENSMUST00000028346.4
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    25104382..25112293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162515.1 → XP_036018408.1  protein FAM166A isoform X4

  2. XM_006498265.4 → XP_006498328.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_006498328.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  3. XM_006498268.5 → XP_006498331.1  protein FAM166A isoform X2

    See identical proteins and their annotated locations for XP_006498331.1

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  4. XM_006498266.4 → XP_006498329.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_006498329.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  5. XM_030252011.2 → XP_030107871.1  protein FAM166A isoform X3

    Conserved Domains (1) summary
    pfam10629
    Location:11 → 36
    DUF2475; Protein of unknown function (DUF2475)

  6. XM_006498267.4 → XP_006498330.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_006498330.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  7. XM_011239161.3 → XP_011237463.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_011237463.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  8. XM_030252005.2 → XP_030107865.1  protein FAM166A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  9. XM_030252012.2 → XP_030107872.1  protein FAM166A isoform X4

  10. XM_011239162.3 → XP_011237464.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_011237464.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  11. XM_030252010.2 → XP_030107870.1  protein FAM166A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  12. XM_030252015.2 → XP_030107875.1  protein FAM166A isoform X4

  13. XM_011239164.3 → XP_011237466.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_011237466.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  14. XM_030252007.2 → XP_030107867.1  protein FAM166A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  15. XM_030252014.2 → XP_030107874.1  protein FAM166A isoform X4

  16. XM_030252013.2 → XP_030107873.1  protein FAM166A isoform X4

  17. XM_011239165.3 → XP_011237467.1  protein FAM166A isoform X1

    See identical proteins and their annotated locations for XP_011237467.1

    Conserved Domains (1) summary
    pfam10629
    Location:13 → 55
    DUF2475; Protein of unknown function (DUF2475)

  18. XM_030252006.2 → XP_030107866.1  protein FAM166A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  19. XM_030252008.2 → XP_030107868.1  protein FAM166A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)

  20. XM_030252009.2 → XP_030107869.1  protein FAM166A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:13 → 45
    DUF2475; Protein of unknown function (DUF2475)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q9D4K5.1 GenPept UniProtKB/Swiss-Prot:Q9D4K5

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