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Cimip2a ciliary microtubule inner protein 2A [ Mus musculus (house mouse) ]

Gene ID: 68222, updated on 5-Mar-2024

Summary

Official Symbol
Cimip2aprovided by MGI
Official Full Name
ciliary microtubule inner protein 2Aprovided by MGI
Primary source
MGI:MGI:3605773
See related
Ensembl:ENSMUSG00000026969 AllianceGenome:MGI:3605773
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Fam166a; 4931415M17
Summary
Predicted to be located in ciliary basal body. Orthologous to human FAM166A (family with sequence similarity 166 member A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 147.1) and liver E14 (RPKM 8.6) See more
Orthologs
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Genomic context

Location:
2 A3; 2 17.08 cM
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 2 NC_000068.8 (25104382..25112293)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 2 NC_000068.7 (25214699..25222281)

Chromosome 2 - NC_000068.8Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E3362 Neighboring gene CapStarr-seq enhancer MGSCv37_chr2:25052129-25052238 Neighboring gene torsin family 4, member A Neighboring gene negative elongation factor complex member B Neighboring gene predicted gene, 22572 Neighboring gene sperm tail PG rich repeat containing 3 Neighboring gene tubulin, beta 4B class IVB Neighboring gene STARR-seq mESC enhancer starr_03963 Neighboring gene solute carrier family 34 (sodium phosphate), member 3 Neighboring gene ring finger protein 224

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in axonemal A tubule inner sheath IDA
Inferred from Direct Assay
more info
PubMed 
located_in cell projection IEA
Inferred from Electronic Annotation
more info
 
located_in ciliary basal body ISO
Inferred from Sequence Orthology
more info
 
located_in cilium IEA
Inferred from Electronic Annotation
more info
 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytoskeleton IEA
Inferred from Electronic Annotation
more info
 
located_in motile cilium IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
ciliary microtubule inner protein 2A
Names
4931415M17 mRNA
family with sequence similarity 166, member A
protein FAM166A

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001421893.1NP_001408822.1  ciliary microtubule inner protein 2A isoform a

    Status: VALIDATED

    Source sequence(s)
    AL732309
    UniProtKB/Swiss-Prot
    Q9D4K5
  2. NM_001421894.1NP_001408823.1  ciliary microtubule inner protein 2A isoform a

    Status: VALIDATED

    Source sequence(s)
    AL732309
    UniProtKB/Swiss-Prot
    Q9D4K5
  3. NM_001421895.1NP_001408824.1  ciliary microtubule inner protein 2A isoform a

    Status: VALIDATED

    Source sequence(s)
    AL732309
    UniProtKB/Swiss-Prot
    Q9D4K5
  4. NM_001421896.1NP_001408825.1  ciliary microtubule inner protein 2A isoform a

    Status: VALIDATED

    Source sequence(s)
    AL732309
    UniProtKB/Swiss-Prot
    Q9D4K5
  5. NM_001421897.1NP_001408826.1  ciliary microtubule inner protein 2A isoform a

    Status: VALIDATED

    Source sequence(s)
    AL732309
    UniProtKB/Swiss-Prot
    Q9D4K5
  6. NM_001421898.1NP_001408827.1  ciliary microtubule inner protein 2A isoform b

    Status: VALIDATED

    Source sequence(s)
    AL732309
  7. NM_001421900.1NP_001408829.1  ciliary microtubule inner protein 2A isoform c

    Status: VALIDATED

    Source sequence(s)
    AL732309
  8. NM_026624.4NP_080900.1  ciliary microtubule inner protein 2A isoform a

    See identical proteins and their annotated locations for NP_080900.1

    Status: VALIDATED

    Source sequence(s)
    AL732309
    Consensus CDS
    CCDS15752.1
    UniProtKB/Swiss-Prot
    Q9D4K5
    Related
    ENSMUSP00000028346.4, ENSMUST00000028346.4
    Conserved Domains (1) summary
    pfam10629
    Location:1345
    DUF2475; Protein of unknown function (DUF2475)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000068.8 Reference GRCm39 C57BL/6J

    Range
    25104382..25112293
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036162515.1XP_036018408.1  ciliary microtubule inner protein 2A isoform X4

  2. XM_006498265.4XP_006498328.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_006498328.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)
  3. XM_006498268.5XP_006498331.1  ciliary microtubule inner protein 2A isoform X2

    See identical proteins and their annotated locations for XP_006498331.1

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:1345
    DUF2475; Protein of unknown function (DUF2475)
  4. XM_006498266.4XP_006498329.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_006498329.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)
  5. XM_030252011.2XP_030107871.1  ciliary microtubule inner protein 2A isoform X3

    Conserved Domains (1) summary
    pfam10629
    Location:1136
    DUF2475; Protein of unknown function (DUF2475)
  6. XM_006498267.4XP_006498330.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_006498330.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)
  7. XM_011239161.3XP_011237463.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_011237463.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)
  8. XM_030252005.2XP_030107865.1  ciliary microtubule inner protein 2A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:1345
    DUF2475; Protein of unknown function (DUF2475)
  9. XM_030252012.2XP_030107872.1  ciliary microtubule inner protein 2A isoform X4

  10. XM_011239162.3XP_011237464.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_011237464.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)
  11. XM_030252010.2XP_030107870.1  ciliary microtubule inner protein 2A isoform X2

    UniProtKB/Swiss-Prot
    Q9D4K5
    Conserved Domains (1) summary
    pfam10629
    Location:1345
    DUF2475; Protein of unknown function (DUF2475)
  12. XM_030252015.2XP_030107875.1  ciliary microtubule inner protein 2A isoform X4

  13. XM_011239164.3XP_011237466.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_011237466.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)
  14. XM_030252014.2XP_030107874.1  ciliary microtubule inner protein 2A isoform X4

  15. XM_030252013.2XP_030107873.1  ciliary microtubule inner protein 2A isoform X4

  16. XM_011239165.3XP_011237467.1  ciliary microtubule inner protein 2A isoform X1

    See identical proteins and their annotated locations for XP_011237467.1

    Conserved Domains (1) summary
    pfam10629
    Location:1355
    DUF2475; Protein of unknown function (DUF2475)