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FAM166A family with sequence similarity 166 member A [ Homo sapiens (human) ]

Gene ID: 401565, updated on 5-Aug-2022

Summary

Official Symbol
FAM166Aprovided by HGNC
Official Full Name
family with sequence similarity 166 member Aprovided by HGNC
Primary source
HGNC:HGNC:33818
See related
Ensembl:ENSG00000188163 AllianceGenome:HGNC:33818
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSD46
Summary
Located in ciliary basal body. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in duodenum (RPKM 20.3), testis (RPKM 18.9) and 21 other tissues See more
Orthologs
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Genomic context

See FAM166A in Genome Data Viewer
Location:
9q34.3
Exon count:
10
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 9 NC_000009.12 (137243599..137255122, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 9 NC_060933.1 (149481268..149485420, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 9 NC_000009.11 (140138051..140142203, complement)

Chromosome 9 - NC_000009.12Genomic Context describing neighboring genes Neighboring gene hESC enhancers GRCh37_chr9:140121623-140122123 and GRCh37_chr9:140122257-140122882 Neighboring gene ring finger protein 224 Neighboring gene solute carrier family 34 member 3 Neighboring gene tubulin beta 4B class IVb Neighboring gene uncharacterized LOC124902316 Neighboring gene STPG3 antisense RNA 1 Neighboring gene sperm-tail PG-rich repeat containing 3 Neighboring gene negative elongation factor complex member B Neighboring gene torsin family 4 member A

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40100

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in ciliary basal body IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleus HDA PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001001710.3NP_001001710.1  protein FAM166A

    See identical proteins and their annotated locations for NP_001001710.1

    Status: VALIDATED

    Source sequence(s)
    AY604177
    Consensus CDS
    CCDS35186.1
    UniProtKB/Swiss-Prot
    Q6J272, Q8N830
    Related
    ENSP00000344729.4, ENST00000344774.6
    Conserved Domains (1) summary
    pfam10629
    Location:1345
    DUF2475; Protein of unknown function (DUF2475)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000009.12 Reference GRCh38.p14 Primary Assembly

    Range
    137243599..137255122 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047423396.1XP_047279352.1  protein FAM166A isoform X1

  2. XM_047423399.1XP_047279355.1  protein FAM166A isoform X1

  3. XM_047423398.1XP_047279354.1  protein FAM166A isoform X1

  4. XM_047423397.1XP_047279353.1  protein FAM166A isoform X1

  5. XM_024447551.2XP_024303319.1  protein FAM166A isoform X3

  6. XM_047423400.1XP_047279356.1  protein FAM166A isoform X2

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060933.1 Alternate T2T-CHM13v2.0

    Range
    149481268..149485420 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)