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Fam133b family with sequence similarity 133, member B [ Mus musculus (house mouse) ]

Gene ID: 68152, updated on 5-Mar-2024

Summary

Official Symbol
Fam133bprovided by MGI
Official Full Name
family with sequence similarity 133, member Bprovided by MGI
Primary source
MGI:MGI:1915402
See related
Ensembl:ENSMUSG00000058503 AllianceGenome:MGI:1915402
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2900022K02Rik; 5830415L20Rik
Summary
Is expressed in cerebral cortex ventricular layer. Orthologous to several human genes including FAM133B (family with sequence similarity 133 member B). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E11.5 (RPKM 10.0), CNS E14 (RPKM 7.3) and 27 other tissues See more
Orthologs
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Genomic context

See Fam133b in Genome Data Viewer
Location:
5 A1; 5 2.22 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (3593833..3620548)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (3543833..3570548)

Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene STARR-seq mESC enhancer starr_12301 Neighboring gene STARR-seq mESC enhancer starr_12302 Neighboring gene predicted gene, 36548 Neighboring gene STARR-seq mESC enhancer starr_12303 Neighboring gene STARR-seq mESC enhancer starr_12305 Neighboring gene cyclin dependent kinase 6, opposite strand transcript 1 Neighboring gene STARR-seq mESC enhancer starr_12306 Neighboring gene STARR-seq mESC enhancer starr_12307 Neighboring gene STARR-positive B cell enhancer ABC_E10299 Neighboring gene STARR-positive B cell enhancer ABC_E2150 Neighboring gene cyclin dependent kinase 6 Neighboring gene STARR-positive B cell enhancer ABC_E2736 Neighboring gene STARR-seq mESC enhancer starr_12309 Neighboring gene predicted gene, 29868 Neighboring gene STARR-seq mESC enhancer starr_12311 Neighboring gene STARR-positive B cell enhancer ABC_E4741 Neighboring gene RIKEN cDNA 1700109H08 gene Neighboring gene STARR-seq mESC enhancer starr_12313 Neighboring gene STARR-seq mESC enhancer starr_12314 Neighboring gene STARR-positive B cell enhancer ABC_E429 Neighboring gene RNA binding motif protein 48 Neighboring gene peroxisomal biogenesis factor 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001042501.1NP_001035966.1  protein FAM133B

    See identical proteins and their annotated locations for NP_001035966.1

    Status: VALIDATED

    Source sequence(s)
    AC090443, AK008115, BY711248, CK791263
    Consensus CDS
    CCDS39000.1
    UniProtKB/Swiss-Prot
    B2RVR0, Q78HY5, Q9CVI2
    Related
    ENSMUSP00000111189.4, ENSMUST00000115527.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000071.7 Reference GRCm39 C57BL/6J

    Range
    3593833..3620548
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_026583.2: Suppressed sequence

    Description
    NM_026583.2: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.