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Atg101 autophagy related 101 [ Mus musculus (house mouse) ]

Gene ID: 68118, updated on 23-May-2018

Summary

Official Symbol
Atg101provided by MGI
Official Full Name
autophagy related 101provided by MGI
Primary source
MGI:MGI:1915368
See related
Ensembl:ENSMUSG00000037204
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AA407441; AU022967; 9430023L20Rik
Expression
Ubiquitous expression in liver adult (RPKM 17.4), colon adult (RPKM 16.4) and 28 other tissues See more
Orthologs

Genomic context

See Atg101 in Genome Data Viewer
Location:
15; 15 F1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 15 NC_000081.6 (101284301..101290947)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (101114732..101121365)

Chromosome 15 - NC_000081.6Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A330009N23 gene Neighboring gene GRP1 (general receptor for phosphoinositides 1)-associated scaffold protein Neighboring gene nuclear receptor subfamily 4, group A, member 1 Neighboring gene RIKEN cDNA 6030408B16 gene Neighboring gene predicted gene, 41403 Neighboring gene keratin 80 Neighboring gene predicted gene, 35853 Neighboring gene microRNA 1941

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

  • Autophagy - animal, organism-specific biosystem (from KEGG)
    Autophagy - animal, organism-specific biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - animal, conserved biosystem (from KEGG)
    Autophagy - animal, conserved biosystemAutophagy (or macroautophagy) is a cellular catabolic pathway involving in protein degradation, organelle turnover, and non-selective breakdown of cytoplasmic components, which is evolutionarily cons...
  • Autophagy - other, organism-specific biosystem (from KEGG)
    Autophagy - other, organism-specific biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Autophagy - other, conserved biosystem (from KEGG)
    Autophagy - other, conserved biosystemAutophagy is a degradative pathway for the removal of cytoplasmic materials in eukaryotic cells, and is characterized by the formation of a double-membrane structure called the autophagosome, either ...
  • Cellular responses to stress, organism-specific biosystem (from REACTOME)
    Cellular responses to stress, organism-specific biosystemcomputationally inferred pathway (not manually curated)
  • Longevity regulating pathway, organism-specific biosystem (from KEGG)
    Longevity regulating pathway, organism-specific biosystemRegulation of longevity depends on genetic and environmental factors. Caloric restriction (CR), that is limiting food intake, is recognized in mammals as the best characterized and most reproducible ...
  • Macroautophagy, organism-specific biosystem (from REACTOME)
    Macroautophagy, organism-specific biosystemcomputationally inferred pathway (not manually curated)

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
identical protein binding ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
autophagosome assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
autophagosome assembly ISO
Inferred from Sequence Orthology
more info
 
autophagy IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
cytoplasm IEA
Inferred from Electronic Annotation
more info
 
phagophore assembly site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
phagophore assembly site ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
autophagy-related protein 101

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026566.2NP_080842.1  autophagy-related protein 101

    See identical proteins and their annotated locations for NP_080842.1

    Status: PROVISIONAL

    Source sequence(s)
    AK007505
    Consensus CDS
    CCDS27849.1
    UniProtKB/Swiss-Prot
    Q9D8Z6
    Related
    ENSMUSP00000045474.6, ENSMUST00000048393.7
    Conserved Domains (1) summary
    pfam07855
    Location:9172
    ATG101; Autophagy-related protein 101

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000081.6 Reference GRCm38.p4 C57BL/6J

    Range
    101284301..101290947
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006521310.3XP_006521373.1  autophagy-related protein 101 isoform X1

    See identical proteins and their annotated locations for XP_006521373.1

    UniProtKB/Swiss-Prot
    Q9D8Z6
    Conserved Domains (1) summary
    pfam07855
    Location:9172
    ATG101; Autophagy-related protein 101
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