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Trabd TraB domain containing [ Mus musculus (house mouse) ]

Gene ID: 67976, updated on 2-Nov-2024

Summary

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Official Symbol
Trabdprovided by MGI
Official Full Name
TraB domain containingprovided by MGI
Primary source
MGI:MGI:1915226
See related
Ensembl:ENSMUSG00000015363 AllianceGenome:MGI:1915226
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5730502D15Rik
Summary
Orthologous to human TRABD (TraB domain containing). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Ubiquitous expression in large intestine adult (RPKM 33.4), duodenum adult (RPKM 33.1) and 28 other tissues See more
Orthologs
human all
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Genomic context

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See Trabd in Genome Data Viewer
Location:
15 E3; 15 44.59 cM
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (88960267..88971278)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (89076064..89087075)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene Mov10 like RISC complex RNA helicase 1 Neighboring gene predicted gene, 23737 Neighboring gene STARR-seq mESC enhancer starr_39456 Neighboring gene STARR-seq mESC enhancer starr_39457 Neighboring gene RIKEN cDNA 1810021B22 gene Neighboring gene pannexin 2 Neighboring gene selenoprotein O Neighboring gene tubulin, gamma complex component 6 Neighboring gene STARR-positive B cell enhancer ABC_E5508 Neighboring gene histone deacetylase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Growth suppression of Escherichia coli by induction of expression of mammalian genes with transmembrane or ATPase domains. Inoue S, et al. Biochem Biophys Res Commun, 2000 Feb 16. PMID 10679242
  2. Prediction of the coding sequences of mouse homologues of FLJ genes: the complete nucleotide sequences of 110 mouse FLJ-homologous cDnas identified by screening of terminal sequences of cDNA clones randomly sampled from size-fractionated libraries. Okazaki N, et al. DNA Res, 2004 Apr 30. PMID 15449545
  3. A global genomic transcriptional code associated with CNS-expressed genes. Bailey PJ, et al. Exp Cell Res, 2006 Oct 1. PMID 16919269
  4. Isolation of novel tissue-specific genes from cDNA libraries representing the individual tissue constituents of the gastrulating mouse embryo. Harrison SM, et al. Development, 1995 Aug. PMID 7671812
  5. Fancd2 in vivo interaction network reveals a non-canonical role in mitochondrial function. Zhang T, et al. Sci Rep, 2017 Apr 5. PMID 28378742, Free PMC Article

See all (19) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (2) 
  • Gene trapped (1) 

Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
traB domain-containing protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355617.1 → NP_001342546.1  traB domain-containing protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC113069
    Conserved Domains (1) summary
    cl12050
    Location:14 → 227
    TraB; TraB family

  2. NM_001378756.1 → NP_001365685.1  traB domain-containing protein isoform 1

    Status: VALIDATED

    Source sequence(s)
    AC113069
    UniProtKB/Swiss-Prot
    Q99JY4, Q9CYF1
    Related
    ENSMUSP00000131228.2, ENSMUST00000165690.2
    Conserved Domains (1) summary
    cd14726
    Location:74 → 272
    TraB_PrgY-like; TraB/PryY confer plasmid-borne pheromone resistance

  3. NM_001378757.1 → NP_001365686.1  traB domain-containing protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC113069
    Conserved Domains (1) summary
    cd14726
    Location:139 → 337
    TraB_PrgY-like; TraB/PryY confer plasmid-borne pheromone resistance

  4. NM_001378758.1 → NP_001365687.1  traB domain-containing protein isoform 3

    Status: VALIDATED

    Source sequence(s)
    AC113069
    Conserved Domains (1) summary
    cd14726
    Location:139 → 337
    TraB_PrgY-like; TraB/PryY confer plasmid-borne pheromone resistance

  5. NM_026485.2 → NP_080761.2  traB domain-containing protein isoform 1

    See identical proteins and their annotated locations for NP_080761.2

    Status: VALIDATED

    Source sequence(s)
    AB030206, AK146027, BU510197, CX200611
    Consensus CDS
    CCDS49696.1
    UniProtKB/Swiss-Prot
    Q99JY4, Q9CYF1
    Related
    ENSMUSP00000080403.6, ENSMUST00000081702.12
    Conserved Domains (1) summary
    cd14726
    Location:74 → 272
    TraB_PrgY-like; TraB/PryY confer plasmid-borne pheromone resistance

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    88960267..88971278
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q99JY4.1 GenPept UniProtKB/Swiss-Prot:Q99JY4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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