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Rer1 retention in endoplasmic reticulum sorting receptor 1 [ Mus musculus (house mouse) ]

Gene ID: 67830, updated on 12-May-2024

Summary

Official Symbol
Rer1provided by MGI
Official Full Name
retention in endoplasmic reticulum sorting receptor 1provided by MGI
Primary source
MGI:MGI:1915080
See related
Ensembl:ENSMUSG00000029048 AllianceGenome:MGI:1915080
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110060F11Rik; 5830454N22Rik
Summary
Enables acetylcholine receptor binding activity. Acts upstream of or within positive regulation of protein localization to plasma membrane and skeletal muscle acetylcholine-gated channel clustering. Located in cell surface and endoplasmic reticulum-Golgi intermediate compartment. Is expressed in several structures, including alimentary system; brain; cardiovascular system; genitourinary system; and immune system. Orthologous to human RER1 (retention in endoplasmic reticulum sorting receptor 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in placenta adult (RPKM 58.8), bladder adult (RPKM 46.9) and 28 other tissues See more
Orthologs
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Genomic context

See Rer1 in Genome Data Viewer
Location:
4 E2; 4 86.17 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (155158566..155170840, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (155074109..155086371, complement)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene phospholipase C, eta 2 Neighboring gene STARR-positive B cell enhancer ABC_E10295 Neighboring gene STARR-positive B cell enhancer ABC_E1295 Neighboring gene peroxisomal biogenesis factor 10 Neighboring gene MORN repeat containing 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:154500916-154501099 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:154524494-154524677 Neighboring gene STARR-positive B cell enhancer mm9_chr4:154536903-154537203 Neighboring gene STARR-seq mESC enhancer starr_12252 Neighboring gene ski sarcoma viral oncogene homolog (avian) Neighboring gene STARR-seq mESC enhancer starr_12254 Neighboring gene predicted gene, 42364

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

General protein information

Preferred Names
protein RER1
Names
RER1 retention in endoplasmic reticulum 1 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001362981.1NP_001349910.1  protein RER1

    Status: VALIDATED

    Source sequence(s)
    AL670413
    Consensus CDS
    CCDS19022.1
    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Related
    ENSMUST00000149796.2
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family
  2. NM_026395.2NP_080671.1  protein RER1

    See identical proteins and their annotated locations for NP_080671.1

    Status: VALIDATED

    Source sequence(s)
    AK002550, BM898853, BY164316
    Consensus CDS
    CCDS19022.1
    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Related
    ENSMUSP00000030914.4, ENSMUST00000030914.4
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    155158566..155170840 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250328.4XP_011248630.1  protein RER1 isoform X1

    See identical proteins and their annotated locations for XP_011248630.1

    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family
  2. XM_006539131.4XP_006539194.1  protein RER1 isoform X1

    See identical proteins and their annotated locations for XP_006539194.1

    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family
  3. XM_006539132.4XP_006539195.1  protein RER1 isoform X1

    See identical proteins and their annotated locations for XP_006539195.1

    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family
  4. XM_030253730.1XP_030109590.1  protein RER1 isoform X1

    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family
  5. XM_006539133.4XP_006539196.1  protein RER1 isoform X1

    See identical proteins and their annotated locations for XP_006539196.1

    UniProtKB/Swiss-Prot
    Q3THP4, Q9CQU3
    Conserved Domains (1) summary
    pfam03248
    Location:20185
    Rer1; Rer1 family