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Slc38a2 solute carrier family 38, member 2 [ Mus musculus (house mouse) ]

Gene ID: 67760, updated on 16-Oct-2021

Summary

Official Symbol
Slc38a2provided by MGI
Official Full Name
solute carrier family 38, member 2provided by MGI
Primary source
MGI:MGI:1915010
See related
Ensembl:ENSMUSG00000022462
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ATA2; SAT2; SNAT2; AI316867; mKIAA1382; 5033402L14Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 43.2), limb E14.5 (RPKM 42.7) and 28 other tissues See more
Orthologs
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Genomic context

See Slc38a2 in Genome Data Viewer
Location:
15; 15 F1
Exon count:
16
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (96585267..96597609, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (96687392..96699728, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (96517823..96530129, complement)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 46503 Neighboring gene predicted gene, 22045 Neighboring gene predicted gene, 32564 Neighboring gene predicted gene, 32677

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Gene trapped (2) 
  • Targeted (1) 

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Process Evidence Code Pubs
involved_in L-serine transport ISO
Inferred from Sequence Orthology
more info
 
involved_in alanine transport ISO
Inferred from Sequence Orthology
more info
 
involved_in amino acid transmembrane transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in amino acid transmembrane transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within amino acid transport IDA
Inferred from Direct Assay
more info
PubMed 
involved_in cellular response to arsenite(3-) ISO
Inferred from Sequence Orthology
more info
 
involved_in glutamine transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in glutamine transport IDA
Inferred from Direct Assay
more info
PubMed 
involved_in glutamine transport ISO
Inferred from Sequence Orthology
more info
 
involved_in glycine betaine transport ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within ion transport IEA
Inferred from Electronic Annotation
more info
 
involved_in neutral amino acid transport ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of RNA splicing ISO
Inferred from Sequence Orthology
more info
 
involved_in positive regulation of gene expression ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of cellular response to stress ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within sodium ion transport IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in axon ISO
Inferred from Sequence Orthology
more info
 
located_in brush border ISO
Inferred from Sequence Orthology
more info
 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in dendrite ISO
Inferred from Sequence Orthology
more info
 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in integral component of plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
located_in neuronal cell body ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 
located_in sarcolemma ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
sodium-coupled neutral amino acid transporter 2
Names
amino acid system A transporter
amino acid transporter A2
system A amino acid transporter 2
system A transporter 1
system N amino acid transporter 2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001355633.1NP_001342562.1  sodium-coupled neutral amino acid transporter 2 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC109201
    Conserved Domains (1) summary
    cl00456
    Location:26412
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
  2. NM_175121.4NP_780330.2  sodium-coupled neutral amino acid transporter 2 isoform 1

    See identical proteins and their annotated locations for NP_780330.2

    Status: VALIDATED

    Source sequence(s)
    AC109201
    Consensus CDS
    CCDS27778.1
    UniProtKB/Swiss-Prot
    Q8CFE6
    Related
    ENSMUSP00000023099.7, ENSMUST00000023099.8
    Conserved Domains (1) summary
    cl00456
    Location:69491
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    96585267..96597609 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036159554.1XP_036015447.1  sodium-coupled neutral amino acid transporter 2 isoform X1

    Conserved Domains (1) summary
    cl00456
    Location:69491
    SLC5-6-like_sbd; Solute carrier families 5 and 6-like; solute binding domain
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