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Saysd1 SAYSVFN motif domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 67509, updated on 5-Mar-2024

Summary

Official Symbol
Saysd1provided by MGI
Official Full Name
SAYSVFN motif domain containing 1provided by MGI
Primary source
MGI:MGI:1914759
See related
Ensembl:ENSMUSG00000045107 AllianceGenome:MGI:1914759
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810063B07Rik; 4930488P03Rik
Summary
Predicted to be located in intracellular membrane-bounded organelle. Orthologous to human SAYSD1 (SAYSVFN motif domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 87.7), colon adult (RPKM 6.4) and 3 other tissues See more
Orthologs
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Genomic context

See Saysd1 in Genome Data Viewer
Location:
14 11.4 cM; 14 A3
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (20125704..20133240, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (20075636..20083172, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene DNA segment, Chr 14, ERATO Doi 670, expressed Neighboring gene STARR-seq mESC enhancer starr_36086 Neighboring gene guanine nucleotide binding protein (G protein), gamma 2 Neighboring gene STARR-seq mESC enhancer starr_36089 Neighboring gene VISTA enhancer mm1498 Neighboring gene STARR-seq mESC enhancer starr_36096 Neighboring gene STARR-seq mESC enhancer starr_36097 Neighboring gene STARR-seq mESC enhancer starr_36099 Neighboring gene predicted gene, 41104 Neighboring gene predicted gene, 52125

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytoplasmic vesicle IEA
Inferred from Electronic Annotation
more info
 
located_in intracellular membrane-bounded organelle ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
SAYSvFN domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026209.1NP_080485.1  SAYSvFN domain-containing protein 1

    See identical proteins and their annotated locations for NP_080485.1

    Status: VALIDATED

    Source sequence(s)
    AK031748, BC027644, BY096351, CJ320425
    Consensus CDS
    CCDS49406.1
    UniProtKB/Swiss-Prot
    Q8K190
    Related
    ENSMUSP00000055382.5, ENSMUST00000059666.6
    Conserved Domains (1) summary
    pfam10260
    Location:113165
    SAYSvFN; Uncharacterized conserved domain (SAYSvFN)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    20125704..20133240 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017316166.3XP_017171655.1  SAYSvFN domain-containing protein 1 isoform X1

    Conserved Domains (1) summary
    pfam10260
    Location:61113
    SAYSvFN; Uncharacterized conserved domain (SAYSvFN)