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SAYSD1 SAYSVFN motif domain containing 1 [ Homo sapiens (human) ]

Gene ID: 55776, updated on 18-Aug-2020

Summary

Official Symbol
SAYSD1provided by HGNC
Official Full Name
SAYSVFN motif domain containing 1provided by HGNC
Primary source
HGNC:HGNC:21025
See related
Ensembl:ENSG00000112167
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf64
Expression
Broad expression in testis (RPKM 17.8), thyroid (RPKM 3.3) and 24 other tissues See more
Orthologs

Genomic context

See SAYSD1 in Genome Data Viewer
Location:
6p21.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (39104063..39115186, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (39071840..39082865, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene ribosomal protein S2 pseudogene Neighboring gene uncharacterized LOC105375046 Neighboring gene glucagon like peptide 1 receptor Neighboring gene microRNA 9983 Neighboring gene ankyrin repeat domain 18E, pseudogene Neighboring gene potassium two pore domain channel subfamily K member 5 Neighboring gene uncharacterized LOC105375047 Neighboring gene potassium two pore domain channel subfamily K member 17

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ11101, DKFZp434H012

Gene Ontology Provided by GOA

Component Evidence Code Pubs
cytoplasmic vesicle membrane IEA
Inferred from Electronic Annotation
more info
 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
intracellular membrane-bounded organelle IDA
Inferred from Direct Assay
more info
 

General protein information

Preferred Names
SAYSvFN domain-containing protein 1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001304793.2NP_001291722.1  SAYSvFN domain-containing protein 1 isoform 2

    See identical proteins and their annotated locations for NP_001291722.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) use and alternate exon in the 5' UTR and 5' coding region which results in the use of an alternate start codon. The encoded isoform (2) has a shorter and distinct N-terminus compared to isoform 1.
    Source sequence(s)
    AF086405, AL035690, CR627244
    Consensus CDS
    CCDS78135.1
    UniProtKB/Swiss-Prot
    Q9NPB0
    Related
    ENSP00000362346.1, ENST00000373249.5
    Conserved Domains (1) summary
    pfam10260
    Location:51103
    SAYSvFN; Uncharacterized conserved domain (SAYSvFN)
  2. NM_018322.3NP_060792.1  SAYSvFN domain-containing protein 1 isoform 1

    See identical proteins and their annotated locations for NP_060792.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the shorter transcript and encodes the longer isoform (1).
    Source sequence(s)
    AF086405, AL035690, BC022007, DA977455
    Consensus CDS
    CCDS4840.1
    UniProtKB/Swiss-Prot
    Q9NPB0
    Related
    ENSP00000229903.4, ENST00000229903.5
    Conserved Domains (1) summary
    pfam10260
    Location:118170
    SAYSvFN; Uncharacterized conserved domain (SAYSvFN)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    39104063..39115186 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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