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Rrp15 ribosomal RNA processing 15 homolog [ Mus musculus (house mouse) ]

Gene ID: 67223, updated on 19-Mar-2023

Summary

Official Symbol
Rrp15provided by MGI
Official Full Name
ribosomal RNA processing 15 homologprovided by MGI
Primary source
MGI:MGI:1914473
See related
Ensembl:ENSMUSG00000001305 AllianceGenome:MGI:1914473
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810430M08Rik; 5430437H21Rik
Summary
This gene encodes a protein similar to budding yeast Rrp15p. Rrp15p is a component of pre-60S ribosomal particles in budding yeast, and is required for the early maturation steps of the 60S subunit. The mouse genome contains at least one pseudogene on the X chromosome. [provided by RefSeq, Jul 2008]
Expression
Biased expression in CNS E11.5 (RPKM 28.7), liver E14 (RPKM 16.9) and 14 other tissues See more
Orthologs
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Genomic context

See Rrp15 in Genome Data Viewer
Location:
1; 1 H5
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 1 NC_000067.7 (186453283..186481555, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 1 NC_000067.6 (186721086..186749358, complement)

Chromosome 1 - NC_000067.7Genomic Context describing neighboring genes Neighboring gene transforming growth factor, beta 2 Neighboring gene predicted gene, 26169 Neighboring gene predicted gene, 35655 Neighboring gene RIKEN cDNA A430105J06 gene Neighboring gene RIKEN cDNA 1700023G09 gene Neighboring gene predicted gene, 39732 Neighboring gene predicted gene, 39731

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in maturation of 5.8S rRNA IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in maturation of LSU-rRNA IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
part_of preribosome, large subunit precursor IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
RRP15-like protein
Names
ribosomal RNA-processing protein 15

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_026041.2NP_080317.3  RRP15-like protein

    See identical proteins and their annotated locations for NP_080317.3

    Status: REVIEWED

    Source sequence(s)
    AK169088, CO043575
    Consensus CDS
    CCDS15602.1
    UniProtKB/Swiss-Prot
    Q9CYX7, Q9D8W8
    Related
    ENSMUSP00000001339.6, ENSMUST00000001339.6
    Conserved Domains (1) summary
    pfam07890
    Location:101215
    Rrp15p; Rrp15p

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000067.7 Reference GRCm39 C57BL/6J

    Range
    186453283..186481555 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)