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Ccdc159 coiled-coil domain containing 159 [ Mus musculus (house mouse) ]

Gene ID: 67119, updated on 17-Aug-2024

Summary

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Official Symbol
Ccdc159provided by MGI
Official Full Name
coiled-coil domain containing 159provided by MGI
Primary source
MGI:MGI:1914369
See related
Ensembl:ENSMUSG00000006241 AllianceGenome:MGI:1914369
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2510048L02Rik
Summary
Orthologous to human CCDC159 (coiled-coil domain containing 159). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in testis adult (RPKM 21.1), CNS E18 (RPKM 4.9) and 17 other tissues See more
Orthologs
human all
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Genomic context

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Location:
9 A3; 9 7.92 cM
Exon count:
13
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (21838767..21847168)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (21927471..21935872)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene dedicator of cytokinesis 6 Neighboring gene angiopoietin-like 8 Neighboring gene STARR-seq mESC enhancer starr_23526 Neighboring gene STARR-seq mESC enhancer starr_23527 Neighboring gene RAB3D, member RAS oncogene family Neighboring gene transmembrane protein 205 Neighboring gene phospholipid phosphatase related 2 Neighboring gene predicted gene, 45914 Neighboring gene SWIM type zinc finger 7 associated protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. A conditional knockout resource for the genome-wide study of mouse gene function. Skarnes WC, et al. Nature, 2011 Jun 15. PMID 21677750, Free PMC Article
  2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
  3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
  4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
  5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

See all (10) citations in PubMed

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1)  1 citation
  • Targeted (1) 

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
  
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
  
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
  

General protein information

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Preferred Names
coiled-coil domain-containing protein 159

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001164614.1 → NP_001158086.1  coiled-coil domain-containing protein 159 isoform 1

    See identical proteins and their annotated locations for NP_001158086.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longer protein (isoform 1).
    Source sequence(s)
    AK011114, AK042884
    Consensus CDS
    CCDS52738.1
    UniProtKB/Swiss-Prot
    Q0VBB7, Q8C963, Q9CXZ5, Q9D4W5
    Related
    ENSMUSP00000126474.2, ENSMUST00000170304.9

  2. NM_025977.3 → NP_080253.2  coiled-coil domain-containing protein 159 isoform 2

    See identical proteins and their annotated locations for NP_080253.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses a different splice site at the 5' end which results in the use of a downstream start codon, compared to variant 1. The resulting protein (isoform 2) has a shorter and distinct N-terminus when compared to isoform 1.
    Source sequence(s)
    AK011114, BC120702
    Consensus CDS
    CCDS40557.1
    UniProtKB/Swiss-Prot
    Q8C963
    Related
    ENSMUSP00000006403.7, ENSMUST00000006403.7

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    21838767..21847168
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
Q8C963.1 GenPept UniProtKB/Swiss-Prot:Q8C963

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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