U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

1700024G13Rik RIKEN cDNA 1700024G13 gene [ Mus musculus (house mouse) ]

Gene ID: 67085, updated on 5-Mar-2024

Summary

Official Symbol
1700024G13Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700024G13 geneprovided by MGI
Primary source
MGI:MGI:1914335
See related
Ensembl:ENSMUSG00000072473 AllianceGenome:MGI:1914335
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
C10orf53
Summary
Is expressed in brain; nasal cavity respiratory epithelium; node; reproductive system; and respiratory system. Orthologous to human C10orf53 (chromosome 10 open reading frame 53). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis adult (RPKM 83.4) See more
Orthologs
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

See 1700024G13Rik in Genome Data Viewer
Location:
14 B; 14 19.4 cM
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 14 NC_000080.7 (32098459..32110330, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 14 NC_000080.6 (32376502..32388373, complement)

Chromosome 14 - NC_000080.7Genomic Context describing neighboring genes Neighboring gene poly (ADP-ribose) glycohydrolase Neighboring gene STARR-seq mESC enhancer starr_36341 Neighboring gene predicted gene, 48914 Neighboring gene oxoglutarate dehydrogenase-like Neighboring gene predicted gene, 52134 Neighboring gene STARR-seq mESC enhancer starr_36344 Neighboring gene choline O-acetyltransferase Neighboring gene solute carrier family 18 (vesicular monoamine), member 3 Neighboring gene excision repair cross-complementing rodent repair deficiency, complementation group 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Clone Names

  • MGC130143, MGC130144

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
UPF0728 protein C10orf53 homolog

NCBI Reference Sequences (RefSeq)

NEW Try the new Transcript table

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001034037.1NP_001029209.1  UPF0728 protein C10orf53 homolog

    See identical proteins and their annotated locations for NP_001029209.1

    Status: PROVISIONAL

    Source sequence(s)
    BC107223
    Consensus CDS
    CCDS36867.1
    UniProtKB/Swiss-Prot
    Q3KNL4
    Related
    ENSMUSP00000098289.3, ENSMUST00000100723.4
    Conserved Domains (1) summary
    pfam15092
    Location:189
    UPF0728; uncharacterized protein family UPF0728

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000080.7 Reference GRCm39 C57BL/6J

    Range
    32098459..32110330 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)