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1700010I14Rik RIKEN cDNA 1700010I14 gene [ Mus musculus (house mouse) ]

Gene ID: 66931, updated on 25-Sep-2020

Summary

Official Symbol
1700010I14Rikprovided by MGI
Official Full Name
RIKEN cDNA 1700010I14 geneprovided by MGI
Primary source
MGI:MGI:1914181
See related
Ensembl:ENSMUSG00000023873
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Expression
Restricted expression toward testis adult (RPKM 80.5) See more
Orthologs
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Genomic context

See 1700010I14Rik in Genome Data Viewer
Location:
17; 17 A1
Exon count:
11
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (9207152..9227151)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (8988320..9008319)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 17 NC_000083.5 (9181198..9201184)

Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene phosphodiesterase 10A Neighboring gene ribosomal protein L19 pseudogene Neighboring gene predicted gene, 34321 Neighboring gene RIKEN cDNA 6530411M01 gene Neighboring gene predicted gene, 29711 Neighboring gene predicted gene, 52287

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
uncharacterized protein C6orf118 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001347544.1NP_001334473.1  uncharacterized protein C6orf118 homolog isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122893, AK005830, AK161278, AV257018
    Consensus CDS
    CCDS84275.1
    UniProtKB/TrEMBL
    Q3TTN6, Q7TPG0, Q9DAH6
    Related
    ENSMUSP00000024650.5, ENSMUST00000024650.11
  2. NM_025851.3NP_080127.2  uncharacterized protein C6orf118 homolog isoform 1

    See identical proteins and their annotated locations for NP_080127.2

    Status: VALIDATED

    Source sequence(s)
    AC122893, AK006307, AV257018, BC050753
    Consensus CDS
    CCDS28385.2
    UniProtKB/TrEMBL
    Q3TTN6, Q9CVW1
    Related
    ENSMUSP00000118841.1, ENSMUST00000151609.1
    Conserved Domains (3) summary
    pfam14235
    Location:351418
    DUF4337; Domain of unknown function (DUF4337)
    pfam15739
    Location:242344
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
    cl17173
    Location:431482
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000083.7 Reference GRCm39 C57BL/6J

    Range
    9207152..9227151
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_004939569.1 RNA Sequence

  2. XR_003952172.1 RNA Sequence

  3. XR_004939570.1 RNA Sequence

  4. XR_876377.3 RNA Sequence

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