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C6orf118 chromosome 6 open reading frame 118 [ Homo sapiens (human) ]

Gene ID: 168090, updated on 7-Dec-2018

Summary

Official Symbol
C6orf118provided by HGNC
Official Full Name
chromosome 6 open reading frame 118provided by HGNC
Primary source
HGNC:HGNC:21233
See related
Ensembl:ENSG00000112539
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
bA85G2.1; dJ416F21.2
Expression
Biased expression in testis (RPKM 3.6), lung (RPKM 1.2) and 1 other tissue See more
Orthologs

Genomic context

See C6orf118 in Genome Data Viewer
Location:
6q27
Exon count:
14
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 6 NC_000006.12 (165279403..165309647, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (165693153..165723111, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986667 Neighboring gene melanoma-associated transcript 6 Neighboring gene uncharacterized LOC105378113 Neighboring gene uncharacterized LOC105378116 Neighboring gene phosphodiesterase 10A Neighboring gene RNA, 5S ribosomal pseudogene 226

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
Genome-wide association for abdominal subcutaneous and visceral adipose reveals a novel locus for visceral fat in women.
NHGRI GWA Catalog
Genome-wide interaction studies reveal sex-specific asthma risk alleles.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC23884

General protein information

Preferred Names
uncharacterized protein C6orf118
Names
dJ416F21.2 (novel protein)

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_144980.4NP_659417.2  uncharacterized protein C6orf118

    See identical proteins and their annotated locations for NP_659417.2

    Status: VALIDATED

    Source sequence(s)
    AI333765, BC026278, BM968092, DB454755
    Consensus CDS
    CCDS5288.1
    UniProtKB/Swiss-Prot
    Q5T5N4
    Related
    ENSP00000230301.8, ENST00000230301.8
    Conserved Domains (1) summary
    pfam15739
    Location:248351
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p12 Primary Assembly

    Range
    165279403..165309647 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011535511.3XP_011533813.1  uncharacterized protein C6orf118 isoform X3

    Conserved Domains (1) summary
    pfam15739
    Location:283386
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  2. XM_005266838.2XP_005266895.1  uncharacterized protein C6orf118 isoform X4

    Conserved Domains (1) summary
    pfam15739
    Location:248351
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  3. XM_011535513.2XP_011533815.1  uncharacterized protein C6orf118 isoform X6

    See identical proteins and their annotated locations for XP_011533815.1

    Conserved Domains (1) summary
    pfam15739
    Location:144247
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  4. XM_017010324.1XP_016865813.1  uncharacterized protein C6orf118 isoform X6

    Conserved Domains (1) summary
    pfam15739
    Location:144247
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  5. XM_011535510.2XP_011533812.1  uncharacterized protein C6orf118 isoform X2

    Conserved Domains (1) summary
    pfam15739
    Location:283366
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  6. XM_011535509.2XP_011533811.1  uncharacterized protein C6orf118 isoform X1

    Conserved Domains (1) summary
    pfam15739
    Location:283386
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  7. XM_011535512.2XP_011533814.1  uncharacterized protein C6orf118 isoform X6

    See identical proteins and their annotated locations for XP_011533814.1

    Conserved Domains (1) summary
    pfam15739
    Location:144247
    TSNAXIP1_N; Translin-associated factor X-interacting N-terminus
  8. XM_017010323.1XP_016865812.1  uncharacterized protein C6orf118 isoform X5

RNA

  1. XR_942320.3 RNA Sequence

  2. XR_942319.3 RNA Sequence

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