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Serbp1 serpine1 mRNA binding protein 1 [ Mus musculus (house mouse) ]

Gene ID: 66870, updated on 8-Jan-2023

Summary

Official Symbol
Serbp1provided by MGI
Official Full Name
serpine1 mRNA binding protein 1provided by MGI
Primary source
MGI:MGI:1914120
See related
Ensembl:ENSMUSG00000036371 AllianceGenome:MGI:1914120
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Pairbp1; 1200009K13Rik; 9330147J08Rik
Summary
Predicted to enable SUMO binding activity; mRNA 3'-UTR binding activity; and ribosome binding activity. Predicted to be involved in PML body organization and regulation of apoptotic process. Predicted to be located in cytosol and plasma membrane. Predicted to be active in cytoplasm and nucleus. Is expressed in early conceptus; oocyte; ovary; and ovary stratum granulosum. Orthologous to human SERBP1 (SERPINE1 mRNA binding protein 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 69.9), liver E14 (RPKM 49.8) and 25 other tissues See more
Orthologs
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Genomic context

See Serbp1 in Genome Data Viewer
Location:
6; 6 C1
Exon count:
8
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (67243963..67266286)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (67266979..67289302)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 38825 Neighboring gene Sod1 pseudogene Neighboring gene interleukin 12 receptor, beta 2 Neighboring gene small nucleolar RNA SNORA40 Neighboring gene aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
enables SUMO binding ISO
Inferred from Sequence Orthology
more info
 
enables mRNA 3'-UTR binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
enables mRNA 3'-UTR binding ISO
Inferred from Sequence Orthology
more info
 
enables ribosome binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in PML body organization ISO
Inferred from Sequence Orthology
more info
 
involved_in regulation of apoptotic process ISO
Inferred from Sequence Orthology
more info
 
Component Evidence Code Pubs
is_active_in cytoplasm IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in cytoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in nucleus ISO
Inferred from Sequence Orthology
more info
 
located_in plasma membrane ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
plasminogen activator inhibitor 1 RNA-binding protein
Names
PAI-1 mRNA-binding protein
PAI-RBP1
PAI1 RNA-binding protein 1
SERPINE1 mRNA-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001113564.1NP_001107036.1  plasminogen activator inhibitor 1 RNA-binding protein isoform 2

    See identical proteins and their annotated locations for NP_001107036.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) has an alternate splice site in the CDS, as compared to variant 1. The resulting isoform (2) lacks an internal segment, as compared to isoform 1.
    Source sequence(s)
    AC130822, AK144764, BY083551
    Consensus CDS
    CCDS85061.1
    UniProtKB/TrEMBL
    Q3UMP4
    Related
    ENSMUSP00000144713.2, ENSMUST00000203436.3
    Conserved Domains (2) summary
    pfam04774
    Location:189306
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:5119
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
  2. NM_001113565.1NP_001107037.1  plasminogen activator inhibitor 1 RNA-binding protein isoform 3

    See identical proteins and their annotated locations for NP_001107037.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (23) has an alternate splice site in the CDS, as compared to variant 1. The resulting isoform (3) lacks an internal segment, as compared to isoform 1.
    Source sequence(s)
    AC130822, AK004678, AK010860
    Consensus CDS
    CCDS85060.1
    UniProtKB/Swiss-Prot
    Q9CY58
    Related
    ENSMUSP00000144913.2, ENSMUST00000203077.3
    Conserved Domains (2) summary
    pfam04774
    Location:189297
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:5119
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
  3. NM_001113566.1NP_001107038.1  plasminogen activator inhibitor 1 RNA-binding protein isoform 4

    See identical proteins and their annotated locations for NP_001107038.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) has two alternate splice sites in the CDS, as compared to variant 1. The resulting isoform (4) lacks two internal segments, as compared to isoform 1.
    Source sequence(s)
    AC130822, BC030502, BY083551
    Consensus CDS
    CCDS85062.1
    UniProtKB/Swiss-Prot
    Q9CY58
    UniProtKB/TrEMBL
    Q3UEI6
    Related
    ENSMUSP00000145472.2, ENSMUST00000204293.3
    Conserved Domains (2) summary
    pfam04774
    Location:189291
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:5152
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal
  4. NM_025814.2NP_080090.2  plasminogen activator inhibitor 1 RNA-binding protein isoform 1

    See identical proteins and their annotated locations for NP_080090.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) encodes the longest isoform (1).
    Source sequence(s)
    AC130822, AK004678
    Consensus CDS
    CCDS20219.1
    UniProtKB/Swiss-Prot
    Q9CY58, Q9DBY6
    UniProtKB/TrEMBL
    A0A8C6HUA9
    Related
    ENSMUSP00000039110.5, ENSMUST00000042990.7
    Conserved Domains (2) summary
    pfam04774
    Location:189312
    HABP4_PAI-RBP1; Hyaluronan / mRNA binding family
    pfam16174
    Location:5119
    IHABP4_N; Intracellular hyaluronan-binding protein 4 N-terminal

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    67243963..67266286
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)