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Klhl28 kelch-like 28 [ Mus musculus (house mouse) ]

Gene ID: 66689, updated on 26-Sep-2022

Summary

Official Symbol
Klhl28provided by MGI
Official Full Name
kelch-like 28provided by MGI
Primary source
MGI:MGI:1913939
See related
Ensembl:ENSMUSG00000020948 AllianceGenome:MGI:1913939
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Btbd5; 2810440N09Rik; 4122402F11Rik; 4931401E10Rik
Summary
Is expressed in ganglia and sensory organ. Orthologous to human KLHL28 (kelch like family member 28). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in whole brain E14.5 (RPKM 2.1), CNS E18 (RPKM 2.1) and 27 other tissues See more
Orthologs
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Genomic context

See Klhl28 in Genome Data Viewer
Location:
12; 12 C1
Exon count:
7
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 12 NC_000078.7 (64985603..65012365, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 12 NC_000078.6 (64941486..64965581, complement)

Chromosome 12 - NC_000078.7Genomic Context describing neighboring genes Neighboring gene ribosomal protein L7A, pseudogene 1 Neighboring gene predicted gene, 51965 Neighboring gene predicted gene 527 Neighboring gene TOG array regulator of axonemal microtubules 1 Neighboring gene predicted gene, 51966 Neighboring gene pre-mRNA processing factor 39 Neighboring gene predicted gene, 25970

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC47075

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
kelch-like protein 28
Names
BTB (POZ) domain containing 5
BTB/POZ domain-containing protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025707.3NP_079983.1  kelch-like protein 28

    See identical proteins and their annotated locations for NP_079983.1

    Status: PROVISIONAL

    Source sequence(s)
    AC159632
    Consensus CDS
    CCDS25938.1
    UniProtKB/Swiss-Prot
    Q9CR40, Q9CYV0
    Related
    ENSMUSP00000152602.2, ENSMUST00000222508.2
    Conserved Domains (2) summary
    PHA03098
    Location:35553
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:423465
    Kelch; KELCH repeat [structural motif]

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000078.7 Reference GRCm39 C57BL/6J

    Range
    64985603..65012365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006516156.5XP_006516219.1  kelch-like protein 28 isoform X1

    See identical proteins and their annotated locations for XP_006516219.1

    UniProtKB/Swiss-Prot
    Q9CR40, Q9CYV0
    Related
    ENSMUSP00000021331.8, ENSMUST00000021331.9
    Conserved Domains (2) summary
    PHA03098
    Location:35553
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:423465
    Kelch; KELCH repeat [structural motif]
  2. XM_006516157.5XP_006516220.1  kelch-like protein 28 isoform X2

    Conserved Domains (3) summary
    PHA03098
    Location:35522
    PHA03098; kelch-like protein; Provisional
    sd00038
    Location:376419
    Kelch; KELCH repeat [structural motif]
    cd18257
    Location:17134
    BTB_POZ_KLHL28_BTBD5; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain found in Kelch-like protein 28 (KLHL28)