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Tex12 testis expressed 12 [ Mus musculus (house mouse) ]

Gene ID: 66654, updated on 8-Feb-2024

Summary

Official Symbol
Tex12provided by MGI
Official Full Name
testis expressed 12provided by MGI
Primary source
MGI:MGI:1913904
See related
Ensembl:ENSMUSG00000032065 AllianceGenome:MGI:1913904
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
5730518K06Rik
Summary
Acts upstream of or within meiotic DNA repair synthesis and synaptonemal complex assembly. Located in central element. Is expressed in oocyte and spermatocyte. Orthologous to human TEX12 (testis expressed 12). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Biased expression in testis adult (RPKM 2.2), liver adult (RPKM 0.2) and 1 other tissue See more
Orthologs
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Genomic context

See Tex12 in Genome Data Viewer
Location:
9 A5.3; 9 27.75 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (50468448..50472568, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (50557148..50561268, complement)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:50341457-50341566 Neighboring gene 6-pyruvoyl-tetrahydropterin synthase Neighboring gene beta-carotene oxygenase 2 Neighboring gene interleukin 18 Neighboring gene succinate dehydrogenase complex, subunit D, integral membrane protein Neighboring gene translocase of inner mitochondrial membrane 8B Neighboring gene NKAP domain containing 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
is_active_in central element IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in central element IDA
Inferred from Direct Assay
more info
PubMed 
located_in chromosome IDA
Inferred from Direct Assay
more info
PubMed 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
located_in synaptonemal complex IDA
Inferred from Direct Assay
more info
PubMed 
located_in synaptonemal complex ISS
Inferred from Sequence or Structural Similarity
more info
PubMed 

General protein information

Preferred Names
testis-expressed protein 12
Names
testis expressed gene 12
testis exprtessed gene 12
testis-expressed sequence 12 protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025687.3NP_079963.1  testis-expressed protein 12

    See identical proteins and their annotated locations for NP_079963.1

    Status: PROVISIONAL

    Source sequence(s)
    BC048458
    Consensus CDS
    CCDS40621.1
    UniProtKB/Swiss-Prot
    Q9CR81
    Related
    ENSMUSP00000149921.2, ENSMUST00000217236.2
    Conserved Domains (1) summary
    pfam15219
    Location:28122
    TEX12; Testis-expressed 12

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    50468448..50472568 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)