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TEX12 testis expressed 12 [ Homo sapiens (human) ]

Gene ID: 56158, updated on 22-Aug-2020

Summary

Official Symbol
TEX12provided by HGNC
Official Full Name
testis expressed 12provided by HGNC
Primary source
HGNC:HGNC:11734
See related
Ensembl:ENSG00000150783 MIM:605791
Gene type
protein coding
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Summary
This gene is similar to a mouse gene that is expressed in the testis. [provided by RefSeq, Jul 2008]
Expression
Biased expression in testis (RPKM 7.9) and small intestine (RPKM 0.2) See more
Orthologs

Genomic context

See TEX12 in Genome Data Viewer
Location:
11q23.1
Exon count:
5
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (112167372..112172556)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (112004926..112043279)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene interleukin 18 Neighboring gene uncharacterized LOC107987164 Neighboring gene beta-carotene oxygenase 2 Neighboring gene potassium channel tetramerization domain containing 9 pseudogene 4 Neighboring gene mitochondrial ribosomal protein S36 pseudogene 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

Associated conditions

Description Tests
Novel gene variants predict serum levels of the cytokines IL-18 and IL-1ra in older adults.
GeneReviews: Not available

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included genes: SDHD, BCO2

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
meiotic DNA repair synthesis IEA
Inferred from Electronic Annotation
more info
 
synaptonemal complex assembly IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
central element IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
testis-expressed protein 12
Names
testis expressed sequence 12
testis-expressed sequence 12 protein variant 1
testis-expressed sequence 12 protein variant 2
testis-expressed sequence 12 protein variant 3

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_031275.4NP_112565.1  testis-expressed protein 12

    See identical proteins and their annotated locations for NP_112565.1

    Status: REVIEWED

    Source sequence(s)
    AF285600, BC029506
    Consensus CDS
    CCDS31679.1
    UniProtKB/Swiss-Prot
    Q9BXU0
    UniProtKB/TrEMBL
    A0A024R3E7
    Related
    ENSP00000280358.4, ENST00000280358.5
    Conserved Domains (1) summary
    pfam15219
    Location:28122
    TEX12; Testis-expressed 12

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    112167372..112172556
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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