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Rex1bd required for excision 1-B domain containing [ Mus musculus (house mouse) ]

Gene ID: 66462, updated on 5-Mar-2024

Summary

Official Symbol
Rex1bdprovided by MGI
Official Full Name
required for excision 1-B domain containingprovided by MGI
Primary source
MGI:MGI:1913712
See related
Ensembl:ENSMUSG00000058833 AllianceGenome:MGI:1913712
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
2810428I15Rik
Summary
Orthologous to human REX1BD (required for excision 1-B domain containing). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in adrenal adult (RPKM 105.5), ovary adult (RPKM 88.7) and 28 other tissues See more
Orthologs
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Genomic context

Location:
8 B3.3; 8 34.15 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (70956945..70959402, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70504295..70506752, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700020G03 gene Neighboring gene cytokine receptor-like factor 1 Neighboring gene RIKEN cDNA 4930522P08 gene Neighboring gene STARR-positive B cell enhancer ABC_E5013 Neighboring gene ubiquitin A-52 residue ribosomal protein fusion product 1

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
required for excision 1-B domain-containing protein
Names
uncharacterized protein C19orf60 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357209.1NP_001344138.1  required for excision 1-B domain-containing protein isoform 2

    Status: VALIDATED

    Source sequence(s)
    AA217756, AC157774, AK013181, BX526270
    Conserved Domains (1) summary
    pfam14966
    Location:31118
    DNA_repr_REX1B; DNA repair REX1-B
  2. NM_025577.3NP_079853.1  required for excision 1-B domain-containing protein isoform 1

    See identical proteins and their annotated locations for NP_079853.1

    Status: VALIDATED

    Source sequence(s)
    AA217756, AC157774, AK013181
    Consensus CDS
    CCDS22370.1
    UniProtKB/Swiss-Prot
    Q3TUY7, Q9CRH2, Q9CYZ6
    UniProtKB/TrEMBL
    D3YZ60
    Related
    ENSMUSP00000074670.6, ENSMUST00000075175.12
    Conserved Domains (1) summary
    pfam14966
    Location:31126
    DNA_repr_REX1B; DNA repair REX1-B

RNA

  1. NR_151646.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AA217756, AC157774, BQ747525, BY285907
    Related
    ENSMUST00000133683.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    70956945..70959402 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)