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Tma16 translation machinery associated 16 [ Mus musculus (house mouse) ]

Gene ID: 66282, updated on 11-Apr-2024

Summary

Official Symbol
Tma16provided by MGI
Official Full Name
translation machinery associated 16provided by MGI
Primary source
MGI:MGI:1913532
See related
Ensembl:ENSMUSG00000025591 AllianceGenome:MGI:1913532
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1810029B16Rik
Summary
Predicted to be located in nucleolus and nucleoplasm. Predicted to be active in nucleus. Is expressed in liver lobe and urethra. Orthologous to human TMA16 (translation machinery associated 16 homolog). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in CNS E11.5 (RPKM 3.1), CNS E14 (RPKM 2.3) and 24 other tissues See more
Orthologs
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Genomic context

See Tma16 in Genome Data Viewer
Location:
8 B3.1; 8 33.14 cM
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (66928995..66939182, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (66476343..66486530, complement)

Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene membrane associated ring-CH-type finger 1 Neighboring gene predicted gene, 26123 Neighboring gene STARR-seq mESC enhancer starr_21667 Neighboring gene predicted gene, 24205 Neighboring gene STARR-seq mESC enhancer starr_21668 Neighboring gene STARR-seq mESC enhancer starr_21669 Neighboring gene STARR-seq mESC enhancer starr_21670 Neighboring gene STARR-seq mESC enhancer starr_21671 Neighboring gene CapStarr-seq enhancer MGSCv37_chr8:69010363-69010546 Neighboring gene STARR-seq mESC enhancer starr_21673 Neighboring gene predicted gene, 32568 Neighboring gene transketolase-like 2

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
enables preribosome binding ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in ribosomal large subunit biogenesis ISO
Inferred from Sequence Orthology
more info
 
acts_upstream_of_or_within ribosome biogenesis IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in nucleolus ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 

General protein information

Preferred Names
translation machinery-associated protein 16
Names
UPF0534 protein C4orf43 homolog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001357208.1NP_001344137.1  translation machinery-associated protein 16 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC122800, AK031875, BC016246
    Conserved Domains (1) summary
    pfam11176
    Location:399
    Tma16; Translation machinery-associated protein 16
  2. NM_025465.3NP_079741.1  translation machinery-associated protein 16 isoform 1

    See identical proteins and their annotated locations for NP_079741.1

    Status: VALIDATED

    Source sequence(s)
    AC122800, AK031875, BC034844, BF020125
    Consensus CDS
    CCDS40353.1
    UniProtKB/Swiss-Prot
    Q05DD8, Q9CR02
    Related
    ENSMUSP00000026681.6, ENSMUST00000026681.7
    Conserved Domains (1) summary
    pfam11176
    Location:13161
    DUF2962; Protein of unknown function (DUF2962)

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000074.7 Reference GRCm39 C57BL/6J

    Range
    66928995..66939182 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)