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TMA16 translation machinery associated 16 homolog [ Homo sapiens (human) ]

Gene ID: 55319, updated on 21-Dec-2019

Summary

Official Symbol
TMA16provided by HGNC
Official Full Name
translation machinery associated 16 homologprovided by HGNC
Primary source
HGNC:HGNC:25638
See related
Ensembl:ENSG00000198498
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C4orf43
Expression
Ubiquitous expression in testis (RPKM 10.4), endometrium (RPKM 8.9) and 25 other tissues See more
Orthologs

Genomic context

See TMA16 in Genome Data Viewer
Location:
4q32.2
Exon count:
7
Annotation release Status Assembly Chr Location
109.20191205 current GRCh38.p13 (GCF_000001405.39) 4 NC_000004.12 (163494690..163520539)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (164415673..164441691)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene CRISPRi-validated cis-regulatory element chr4.3253 Neighboring gene transketolase like 2 Neighboring gene membrane associated ring-CH-type finger 1 Neighboring gene uncharacterized LOC107986325 Neighboring gene RN7SK pseudogene 105

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ11184, FLJ52950

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleus HDA PubMed 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
translation machinery-associated protein 16
Names
UPF0534 protein C4orf43

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_018352.3NP_060822.2  translation machinery-associated protein 16

    See identical proteins and their annotated locations for NP_060822.2

    Status: VALIDATED

    Source sequence(s)
    AA772718, AW518118, BC011842, BU159489, BX370094
    Consensus CDS
    CCDS43278.1
    UniProtKB/Swiss-Prot
    Q96EY4
    Related
    ENSP00000351380.5, ENST00000358572.10
    Conserved Domains (1) summary
    pfam11176
    Location:13161
    DUF2962; Protein of unknown function (DUF2962)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20191205

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p13 Primary Assembly

    Range
    163494690..163520539
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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