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Nicn1 nicolin 1 [ Mus musculus (house mouse) ]

Gene ID: 66257, updated on 5-Mar-2024

Summary

Official Symbol
Nicn1provided by MGI
Official Full Name
nicolin 1provided by MGI
Primary source
MGI:MGI:1913507
See related
Ensembl:ENSMUSG00000032606 AllianceGenome:MGI:1913507
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
p24; PGs5; 1500032A17Rik
Summary
Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Is expressed in central nervous system and ganglia. Orthologous to human NICN1 (nicolin 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in CNS E18 (RPKM 29.2), whole brain E14.5 (RPKM 26.0) and 28 other tissues See more
Orthologs
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Genomic context

Location:
9 F2; 9 59.18 cM
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (108167642..108173697)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (108290443..108296498)

Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene bassoon Neighboring gene glycine cleavage system protein H (aminomethyl carrier) pseudogene Neighboring gene STARR-positive B cell enhancer ABC_E2306 Neighboring gene STARR-positive B cell enhancer ABC_E6804 Neighboring gene dystroglycan 1 Neighboring gene STARR-positive B cell enhancer ABC_E8316 Neighboring gene STARR-positive B cell enhancer ABC_E2915 Neighboring gene STARR-positive B cell enhancer ABC_E6805 Neighboring gene aminomethyltransferase Neighboring gene T cell leukemia translocation altered gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytosol TAS
Traceable Author Statement
more info
 
located_in microtubule IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
nicolin-1
Names
tubulin polyglutamylase complex subunit 5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001364505.1NP_001351434.1  nicolin-1 isoform 2

    Status: VALIDATED

    Source sequence(s)
    AC161260
    UniProtKB/TrEMBL
    Q3TFI4
  2. NM_025449.4NP_079725.1  nicolin-1 isoform 1

    See identical proteins and their annotated locations for NP_079725.1

    Status: VALIDATED

    Source sequence(s)
    AC161260
    Consensus CDS
    CCDS40767.1
    UniProtKB/Swiss-Prot
    Q9CQM0
    UniProtKB/TrEMBL
    Q3TFI4
    Related
    ENSMUSP00000035227.7, ENSMUST00000035227.8

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000075.7 Reference GRCm39 C57BL/6J

    Range
    108167642..108173697
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)