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Med11 mediator complex subunit 11 [ Mus musculus (house mouse) ]

Gene ID: 66172, updated on 2-Oct-2018

Summary

Official Symbol
Med11provided by MGI
Official Full Name
mediator complex subunit 11provided by MGI
Primary source
MGI:MGI:1913422
See related
Ensembl:ENSMUSG00000018923 Vega:OTTMUSG00000006050
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
AI465144; AW545069; 1110030J09Rik
Expression
Ubiquitous expression in CNS E11.5 (RPKM 12.5), placenta adult (RPKM 11.9) and 28 other tissues See more
Orthologs

Genomic context

See Med11 in Genome Data Viewer
Location:
11; 11 B3
Exon count:
3
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 11 NC_000077.6 (70451931..70453727)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 11 NC_000077.5 (70265433..70267229)

Chromosome 11 - NC_000077.6Genomic Context describing neighboring genes Neighboring gene NADH dehydrogenase (ubiquinone) 1 beta subcomplex 8 pseudogene Neighboring gene arrestin, beta 2 Neighboring gene microRNA 7115 Neighboring gene chemokine (C-X-C motif) ligand 16 Neighboring gene zinc finger, MYND-type containing 15 Neighboring gene transmembrane 4 superfamily member 5

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
transcription coregulator activity IEA
Inferred from Electronic Annotation
more info
 
contributes_to ubiquitin protein ligase activity ISO
Inferred from Sequence Orthology
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
protein ubiquitination ISO
Inferred from Sequence Orthology
more info
 
regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
mediator complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mediator complex ISO
Inferred from Sequence Orthology
more info
PubMed 
nucleus IEA
Inferred from Electronic Annotation
more info
 
ubiquitin ligase complex ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
mediator of RNA polymerase II transcription subunit 11
Names
mediator of RNA polymerase II transcription, subunit 11 homolog

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_025397.2NP_079673.2  mediator of RNA polymerase II transcription subunit 11

    See identical proteins and their annotated locations for NP_079673.2

    Status: PROVISIONAL

    Source sequence(s)
    BC025057
    Consensus CDS
    CCDS24947.1
    UniProtKB/Swiss-Prot
    Q9D8C6
    Related
    ENSMUSP00000019067.7, OTTMUSP00000006319, ENSMUST00000019067.7, OTTMUST00000013628
    Conserved Domains (1) summary
    pfam10280
    Location:8115
    Med11; Mediator complex protein

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000077.6 Reference GRCm38.p4 C57BL/6J

    Range
    70451931..70453727
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCm38.p4 NOD/MrkTac

Genomic

  1. NT_187026.1 Reference GRCm38.p4 NOD/MrkTac

    Range
    556365..558162
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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