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SNAPC1 small nuclear RNA activating complex polypeptide 1 [ Homo sapiens (human) ]

Gene ID: 6617, updated on 1-Jun-2020

Summary

Official Symbol
SNAPC1provided by HGNC
Official Full Name
small nuclear RNA activating complex polypeptide 1provided by HGNC
Primary source
HGNC:HGNC:11134
See related
Ensembl:ENSG00000023608 MIM:600591
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
SNAP43; PTFgamma
Expression
Broad expression in testis (RPKM 12.5), adrenal (RPKM 5.0) and 24 other tissues See more
Orthologs

Genomic context

See SNAPC1 in Genome Data Viewer
Location:
14q23.2
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 14 NC_000014.9 (61762420..61796428)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 14 NC_000014.8 (62229075..62263146)

Chromosome 14 - NC_000014.9Genomic Context describing neighboring genes Neighboring gene HIF1A antisense RNA 1 Neighboring gene HIF1A antisense RNA 3 Neighboring gene hypoxia inducible factor 1 subunit alpha Neighboring gene HIF1A antisense RNA 2 Neighboring gene synaptotagmin 16 Neighboring gene cytochrome c oxidase subunit 4I1 pseudogene 1 Neighboring gene molybdenum cofactor synthesis 3 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Pathways from PubChem

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Potential readthrough

Included gene: HIF1A

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
sequence-specific DNA binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Process Evidence Code Pubs
snRNA transcription by RNA polymerase II IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
snRNA transcription by RNA polymerase II TAS
Traceable Author Statement
more info
 
snRNA transcription by RNA polymerase III IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
nucleolus IDA
Inferred from Direct Assay
more info
 
nucleoplasm IDA
Inferred from Direct Assay
more info
 
nucleoplasm TAS
Traceable Author Statement
more info
 
snRNA-activating protein complex IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
snRNA-activating protein complex subunit 1
Names
PSE-binding factor subunit gamma
PTF subunit gamma
SNAPc 43 kDa subunit
SNAPc subunit 1
proximal sequence element-binding transcription factor subunit gamma
small nuclear RNA activating complex, polypeptide 1, 43kD
small nuclear RNA activating complex, polypeptide 1, 43kDa
snRNA-activating protein complex 43 kDa subunit

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_003082.4NP_003073.1  snRNA-activating protein complex subunit 1

    See identical proteins and their annotated locations for NP_003073.1

    Status: VALIDATED

    Source sequence(s)
    AK314933, BC014984
    Consensus CDS
    CCDS9755.1
    UniProtKB/Swiss-Prot
    Q16533
    UniProtKB/TrEMBL
    B2RC42
    Related
    ENSP00000216294.4, ENST00000216294.5
    Conserved Domains (1) summary
    pfam09808
    Location:7191
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000014.9 Reference GRCh38.p13 Primary Assembly

    Range
    61762420..61796428
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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