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Prr13 proline rich 13 [ Mus musculus (house mouse) ]

Gene ID: 66151, updated on 5-Mar-2024

Summary

Official Symbol
Prr13provided by MGI
Official Full Name
proline rich 13provided by MGI
Primary source
MGI:MGI:1913401
See related
Ensembl:ENSMUSG00000023048 AllianceGenome:MGI:1913401
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
1110020C13Rik; 2010324E22Rik
Summary
Predicted to be located in cytosol. Predicted to be active in nucleoplasm. Orthologous to human PRR13 (proline rich 13). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Broad expression in duodenum adult (RPKM 275.1), large intestine adult (RPKM 264.6) and 27 other tissues See more
Orthologs
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Genomic context

See Prr13 in Genome Data Viewer
Location:
15 F3; 15 57.6 cM
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (102367605..102371241)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (102459170..102462806)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene anti-Mullerian hormone type 2 receptor Neighboring gene STARR-positive B cell enhancer ABC_E1179 Neighboring gene STARR-seq mESC enhancer starr_39843 Neighboring gene predicted gene, 24128 Neighboring gene STARR-positive B cell enhancer ABC_E8613 Neighboring gene STARR-seq mESC enhancer starr_39845 Neighboring gene predicted gene, 36331 Neighboring gene poly(rC) binding protein 2 Neighboring gene mitogen-activated protein kinase kinase kinase 12 Neighboring gene TARBP2, RISC loading complex RNA binding subunit

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

General gene information

Markers

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
is_active_in nucleoplasm IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001170911.1NP_001164382.1  proline-rich protein 13

    See identical proteins and their annotated locations for NP_001164382.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK002430, AK008894, BY285374
    Consensus CDS
    CCDS27883.1
    UniProtKB/Swiss-Prot
    Q3U3U4, Q9CQJ5
    Related
    ENSMUSP00000125784.2, ENSMUST00000164957.8
  2. NM_025385.3NP_079661.1  proline-rich protein 13

    See identical proteins and their annotated locations for NP_079661.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript. Both variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK003850, AK008894, BY285374
    Consensus CDS
    CCDS27883.1
    UniProtKB/Swiss-Prot
    Q3U3U4, Q9CQJ5
    Related
    ENSMUSP00000023810.6, ENSMUST00000023810.12

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    102367605..102371241
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)