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Sk2 Sphingosine kinase 2 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 658654, updated on 6-Jun-2024

Summary

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Gene symbol
Sk2
Gene description
Sphingosine kinase 2
Locus tag
TcasGA2_TC003697
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 1
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 1 NC_087394.1 (22539239..22551502, complement)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG3 NC_007418.3 (12829053..12841965)

Chromosome 1 - NC_087394.1Genomic Context describing neighboring genes Neighboring gene armadillo repeat-containing protein 8 Neighboring gene ankyrin repeat domain-containing protein 54 Neighboring gene uncharacterized LOC135267918 Neighboring gene eukaryotic translation initiation factor 3 subunit e

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables D-erythro-sphingosine kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sphingosine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in intracellular membrane-bounded organelle IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sphingosine kinase 2
Names
AUGUSTUS-3.0.2_03697
GLEAN_03697
Sphingosine kinase 2-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087394.1 Reference icTriCast1.1 Primary Assembly

    Range
    22539239..22551502 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_064359845.1 → XP_064215915.1  sphingosine kinase 2

    UniProtKB/TrEMBL
    D6WDP5

  2. XM_965018.5 → XP_970111.2  sphingosine kinase 2

    See identical proteins and their annotated locations for XP_970111.2

    UniProtKB/TrEMBL
    D6WDP5
    Conserved Domains (2) summary
    PLN02958
    Location:176 → 566
    PLN02958; diacylglycerol kinase/D-erythro-sphingosine kinase
    pfam00781
    Location:177 → 315
    DAGK_cat; Diacylglycerol kinase catalytic domain
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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