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Syx18 Syntaxin 18 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 658484, updated on 10-May-2024

Summary

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Gene symbol
Syx18
Gene description
Syntaxin 18
Locus tag
TcasGA2_TC011475
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 7
Exon count:
2
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 7 NC_087400.1 (1052436..1053620)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG10 NC_007425.3 (6802627..6803762)

Chromosome 7 - NC_087400.1Genomic Context describing neighboring genes Neighboring gene cell division cycle protein 16 Neighboring gene zinc finger protein 239 Neighboring gene Actin-related protein 1 Neighboring gene ATPase phospholipid transporting 8B Neighboring gene Regulatory particle non-ATPase 10

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of SNARE complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
syntaxin-18
Names
AUGUSTUS-3.0.2_11475
GLEAN_11475
Syntaxin-18-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087400.1 Reference icTriCast1.1 Primary Assembly

    Range
    1052436..1053620
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_964868.5 → XP_969961.1  syntaxin-18

    See identical proteins and their annotated locations for XP_969961.1

    UniProtKB/TrEMBL
    D6X505
    Conserved Domains (2) summary
    pfam10496
    Location:2 → 85
    Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
    cl22856
    Location:205 → 263
    SNARE; SNARE motif

  2. XM_008200716.3 → XP_008198938.1  syntaxin-18

    See identical proteins and their annotated locations for XP_008198938.1

    UniProtKB/TrEMBL
    D6X505
    Conserved Domains (2) summary
    pfam10496
    Location:2 → 85
    Syntaxin-18_N; SNARE-complex protein Syntaxin-18 N-terminus
    cl22856
    Location:205 → 263
    SNARE; SNARE motif
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

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