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Usp2 Ubiquitin specific protease 2 [ Tribolium castaneum (red flour beetle) ]

Gene ID: 656106, updated on 10-May-2024

Summary

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Gene symbol
Usp2
Gene description
Ubiquitin specific protease 2
Locus tag
TcasGA2_TC015173
Gene type
protein coding
RefSeq status
MODEL
Organism
Tribolium castaneum
Lineage
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Hexapoda; Insecta; Pterygota; Neoptera; Endopterygota; Coleoptera; Polyphaga; Cucujiformia; Tenebrionidae; Tenebrionidae incertae sedis; Tribolium
Orthologs
fruit fly all
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Genomic context

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Location:
chromosome: 8
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_04 current icTriCast1.1 (GCF_031307605.1) 8 NC_087401.1 (15478449..15491635)
103 previous assembly Tcas5.2 (GCF_000002335.3) Linkage Group LG6 NC_007421.3 (2053869..2066651, complement)

Chromosome 8 - NC_087401.1Genomic Context describing neighboring genes Neighboring gene NADH-cytochrome b5 reductase-like Neighboring gene enhancer of rudimentary Neighboring gene BLOC-1 related complex subunit 5 Neighboring gene Protein phosphatase 2C Neighboring gene protein GUCD1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. BeetleBase in 2010: revisions to provide comprehensive genomic information for Tribolium castaneum. Kim HS, et al. Nucleic Acids Res, 2010 Jan. PMID 19820115, Free PMC Article
  2. The genome of the model beetle and pest Tribolium castaneum. Tribolium Genome Sequencing Consortium, et al. Nature, 2008 Apr 24. PMID 18362917

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 2
Names
AUGUSTUS-3.0.2_33360
AUGUSTUS-3.0.2_33362
GLEAN_15173
Ubiquitin carboxyl-terminal hydrolase nonstop-like Protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_031307605.1-RS_2024_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference icTriCast1.1 Primary Assembly

Genomic

  1. NC_087401.1 Reference icTriCast1.1 Primary Assembly

    Range
    15478449..15491635
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_962657.4 → XP_967750.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X1

    See identical proteins and their annotated locations for XP_967750.1

    UniProtKB/TrEMBL
    A0A139WGD6
    Conserved Domains (2) summary
    cd02674
    Location:425 → 756
    Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:425 → 755
    UCH; Ubiquitin carboxyl-terminal hydrolase

  2. XM_008203415.3 → XP_008201637.1  ubiquitin carboxyl-terminal hydrolase 2 isoform X2

    Conserved Domains (2) summary
    cd02674
    Location:237 → 568
    Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    pfam00443
    Location:237 → 567
    UCH; Ubiquitin carboxyl-terminal hydrolase
Nucleotide Protein Strain
Heading Accession and Version

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