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FAM228A family with sequence similarity 228 member A [ Homo sapiens (human) ]

Gene ID: 653140, updated on 6-Nov-2022

Summary

Official Symbol
FAM228Aprovided by HGNC
Official Full Name
family with sequence similarity 228 member Aprovided by HGNC
Primary source
HGNC:HGNC:34418
See related
Ensembl:ENSG00000186453 AllianceGenome:HGNC:34418
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf84
Expression
Biased expression in testis (RPKM 10.6) and fat (RPKM 1.0) See more
Orthologs
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Genomic context

See FAM228A in Genome Data Viewer
Location:
2p23.3
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (24175053..24191698)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (24209749..24226392)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (24397922..24414567)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 228 member B Neighboring gene profilin family member 4 Neighboring gene uncharacterized LOC105374328 Neighboring gene intersectin 2 Neighboring gene small Cajal body-specific RNA 21 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 20

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • FLJ30851

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
protein FAM228A
Names
UPF0638 protein C2orf84

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001040710.3NP_001035800.1  protein FAM228A

    See identical proteins and their annotated locations for NP_001035800.1

    Status: VALIDATED

    Source sequence(s)
    AC008073, BC050462, HY022970
    Consensus CDS
    CCDS42659.1
    UniProtKB/Swiss-Prot
    Q86W67
    Related
    ENSP00000295150.3, ENST00000295150.8

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    24175053..24191698
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    24209749..24226392
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)