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FAM228B family with sequence similarity 228 member B [ Homo sapiens (human) ]

Gene ID: 375190, updated on 5-Sep-2021

Summary

Official Symbol
FAM228Bprovided by HGNC
Official Full Name
family with sequence similarity 228 member Bprovided by HGNC
Primary source
HGNC:HGNC:24736
See related
Ensembl:ENSG00000219626
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in testis (RPKM 11.8), fat (RPKM 6.4) and 24 other tissues See more
Orthologs
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Genomic context

See FAM228B in Genome Data Viewer
Location:
2p23.3
Exon count:
14
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (24076833..24169638)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (24299703..24392507)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene RNA, U6 small nuclear 370, pseudogene Neighboring gene FKBP prolyl isomerase 1B Neighboring gene WD repeat and coiled coil containing Neighboring gene splicing factor 3b subunit 6 Neighboring gene tumor protein p53 inducible protein 3 Neighboring gene profilin family member 4 Neighboring gene uncharacterized LOC105374328 Neighboring gene family with sequence similarity 228 member A Neighboring gene intersectin 2 Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 20

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

HIV-1 interactions

Replication interactions

Interaction Pubs
Knockdown of UPF0638 protein B (LOC375190) by siRNA inhibits HIV-1 replication in HeLa-derived TZM-bl cells PubMed

Go to the HIV-1, Human Interaction Database

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ30851

General protein information

Preferred Names
protein FAM228B
Names
UPF0638 protein B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001145710.2NP_001139182.1  protein FAM228B isoform a

    See identical proteins and their annotated locations for NP_001139182.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript and encodes the longer isoform (a).
    Source sequence(s)
    AC008073, BC029459, BM969566, CN395744
    Consensus CDS
    CCDS74491.1
    UniProtKB/TrEMBL
    A0A087WZA1
    Related
    ENSP00000482482.1, ENST00000615575.5
  2. NM_001291328.2NP_001278257.1  protein FAM228B isoform b

    See identical proteins and their annotated locations for NP_001278257.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) contains alternate 5' exon structure, and it thus differs in its 5' UTR and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (b) is shorter at the N-terminus, compared to isoform a.
    Source sequence(s)
    AC008073, BC029459, BM722814
    Consensus CDS
    CCDS77387.1
    UniProtKB/TrEMBL
    A0A087WVX1
    Related
    ENSP00000479742.1, ENST00000613899.4

RNA

  1. NR_111929.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) contains alternate 5' exon structure and lacks five internal exons, compared to variant 1. This variant is represented as non-coding because it lacks most of the coding region, including the translational start codon, as found in variant 1.
    Source sequence(s)
    AC008073, BC029459, BM722814

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    24076833..24169638
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_198553.1: Suppressed sequence

    Description
    NM_198553.1: This RefSeq was permanently suppressed because it is a nonsense-mediated mRNA decay (NMD) candidate.
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