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CTAGE1 cutaneous T cell lymphoma-associated antigen 1 [ Homo sapiens (human) ]

Gene ID: 64693, updated on 5-Jan-2022

Summary

Official Symbol
CTAGE1provided by HGNC
Official Full Name
cutaneous T cell lymphoma-associated antigen 1provided by HGNC
Primary source
HGNC:HGNC:24346
See related
Ensembl:ENSG00000212710 MIM:608856
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CTAGE; CT21.1; CT21.2; CTAGE-1; CTAGE-2
Summary
Predicted to be involved in endoplasmic reticulum to Golgi vesicle-mediated transport; protein secretion; and vesicle cargo loading. Predicted to be integral component of membrane. Predicted to be active in endoplasmic reticulum exit site and endoplasmic reticulum membrane. [provided by Alliance of Genome Resources, Nov 2021]
Orthologs
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Genomic context

See CTAGE1 in Genome Data Viewer
Location:
18q11.2
Exon count:
1
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 18 NC_000018.10 (22413599..22417915, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 18 NC_000018.9 (19993562..19997878, complement)

Chromosome 18 - NC_000018.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101927548 Neighboring gene uncharacterized LOC105372019 Neighboring gene ATPase copper transporting beta pseudogene 1 Neighboring gene Sharpr-MPRA regulatory region 6476

Genomic regions, transcripts, and products

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association analyses identifies a susceptibility locus for tuberculosis on chromosome 18q11.2.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Process Evidence Code Pubs
involved_in biological_process ND
No biological Data available
more info
 
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in protein secretion IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
involved_in vesicle cargo loading IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 
is_active_in endoplasmic reticulum exit site IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
is_active_in endoplasmic reticulum membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
located_in integral component of membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cTAGE family member 2
Names
cancer/testis antigen 21.2
cancer/testis antigen family 21, member 1
cancer/testis antigen family 21, member 2
cutaneous T-cell lymphoma-associated antigen 2
protein cTAGE-2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172241.3NP_758441.2  cTAGE family member 2

    See identical proteins and their annotated locations for NP_758441.2

    Status: VALIDATED

    Source sequence(s)
    AC099849
    Consensus CDS
    CCDS45837.1
    UniProtKB/Swiss-Prot
    Q96RT6
    UniProtKB/TrEMBL
    Q8NEG8
    Related
    ENSP00000375220.2, ENST00000391403.4
    Conserved Domains (1) summary
    cl25732
    Location:55350
    SMC_N; RecF/RecN/SMC N terminal domain

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000018.10 Reference GRCh38.p13 Primary Assembly

    Range
    22413599..22417915 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Reference GRCh38.p13 PATCHES

Genomic

  1. NW_014040928.1 Reference GRCh38.p13 PATCHES

    Range
    24920..29236 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_022663.1: Suppressed sequence

    Description
    NM_022663.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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