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SLC12A2-DT SLC12A2 divergent transcript [ Homo sapiens (human) ]

Gene ID: 644873, updated on 13-May-2022

Summary

Official Symbol
SLC12A2-DTprovided by HGNC
Official Full Name
SLC12A2 divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:49565
See related
Ensembl:ENSG00000245937 AllianceGenome:HGNC:49565
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
LINC01184
Expression
Ubiquitous expression in thyroid (RPKM 5.8), prostate (RPKM 4.7) and 25 other tissues See more
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Genomic context

See SLC12A2-DT in Genome Data Viewer
Location:
5q23.3
Exon count:
11
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (127940440..128083175, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (128460208..128602011, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (127276132..127418867, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 192 Neighboring gene cullin 1 pseudogene 1 Neighboring gene uncharacterized LOC124901059 Neighboring gene solute carrier family 12 member 2 Neighboring gene POGLUT2 pseudogene 1 Neighboring gene fibrillin 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
Genome-wide association study of the rate of cognitive decline in Alzheimer's disease.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 1184

Clone Names

  • FLJ33630

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015360.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332, BX648677, CD723302
    Related
    ENST00000501702.7
  2. NR_152798.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332, AK090949
    Related
    ENST00000687795.1
  3. NR_152799.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
  4. NR_152800.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332
    Related
    ENST00000668567.1
  5. NR_152801.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
    Related
    ENST00000655628.1
  6. NR_152802.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332
    Related
    ENST00000689029.1
  7. NR_152803.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332, DA139927
  8. NR_152804.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005353, AC011332, AC068658, BC036629
  9. NR_152805.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
    Related
    ENST00000664006.1
  10. NR_152806.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
    Related
    ENST00000663841.1
  11. NR_152807.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332
  12. NR_152808.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
    Related
    ENST00000663976.1
  13. NR_152809.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
    Related
    ENST00000656563.1
  14. NR_152810.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
  15. NR_152811.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
  16. NR_152812.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332
  17. NR_152813.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332, AC068658, AF088062
  18. NR_152814.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC005352, AC011332, BX385598
    Related
    ENST00000501652.5
  19. NR_152815.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC011332
    Related
    ENST00000654888.1

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    127940440..128083175 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    128460208..128602011 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)